FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve779.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve779.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1312
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC25219.20731707317073No Hit
AGCCTAGACATCCACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCTTAT17813.567073170731708No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTCTCTTA1128.536585365853659No Hit
AGCCTAGACATCCACTGCTGAGATGTGGTAATGATCCTTCCGCTGTCTCT725.487804878048781No Hit
AGCCTAGACATCCACTGCTGCGGTGGTAATGATCCTTCCGCTGTCTCTTA715.411585365853658No Hit
AGCCTAGACATCCACTGCTGCCGACGTGGTAATGATCCTTCCGCTGTCTC654.954268292682927No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTCTCTT634.801829268292683No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC574.3445121951219505No Hit
AGCCTAGACATCCACTGCTGGGCTCGGAGATGTGGTAATGATCCTTCCGC342.591463414634146No Hit
AGCCTAGACATCCACTGCTGTCAGATGTGGTAATGATCCTTCCGCTGTCT282.1341463414634148No Hit
AGCCTAGACATCCACTGCTGTCTCTTATACACATCTGACGCTGCCGACGA241.8292682926829267No Hit
AGCCTAGACATCCACTGCTGGGGCTCGGAGATGTGGTAATGATCCTTCCG161.2195121951219512No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC70.5335365853658537No Hit
AGCCTAGACATCCACTGCTGCCGAAGAGTGGTAATGATCCTTCCGCTGTC50.38109756097560976No Hit
AGCCTAGACATCCACTGCTGAGGTGGTAATGATCCTTCCGCTGTCTCTTA40.3048780487804878No Hit
AGCCTAGACATACACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCTTAT40.3048780487804878No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT40.3048780487804878No Hit
AGCCTAGACATCCACTGCTGCAGACGAGTGGTAATGATCCTTCCGCTGTC40.3048780487804878No Hit
AGCCTAGACATCAACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCTTAT30.22865853658536583No Hit
AGCCTAGACATCCACTGCTGGGCTAGGAGATGTGGTAATGATCCTTCCGC30.22865853658536583No Hit
AGCCTAGACATCCACTGCTTCCGACGAGTGGTAATGATCCTTCCGCTGTC30.22865853658536583No Hit
AGCCTAGACATCCACTGATGCCGACGAGTGGTAATGATCCTTCCGCTGTC30.22865853658536583No Hit
AGCCTAGACATCCACTGCTCAGTGGTAATGATCCTTCCGCTGTCTCTTAT30.22865853658536583No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTT20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGACCCTTCCGCTGTC20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCATTCCGCTGTCTCTT20.1524390243902439No Hit
AGCCTAGACATCCACTGCTTAGTGGTAATGATCCTTCCGCTGTCTCTTAT20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTATCTT20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCCTAT20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTTGTAATGATCCTTCCGCTGTC20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGGTAATGATCCTTCCGCTGTCTCTTATACAC20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTATCTTA20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATACTTCCGCTGTC20.1524390243902439No Hit
AGCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTCT20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCAGCTGTC20.1524390243902439No Hit
AGCCTAGACATCAACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGTGATGTGGTAATGATCCTTCCGCTGTCTCT20.1524390243902439No Hit
AGCCTAGAAATCCACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCTTAT20.1524390243902439No Hit
AGTCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGCTGTGGTAATGATCCTTCCGCTGTCTCTTA20.1524390243902439No Hit
AGCCTAGACATACACTGCTGCGGTGGTAATGATCCTTCCGCTGTCTCTTA20.1524390243902439No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTACGCTGTCTCTT20.1524390243902439No Hit
AACCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC20.1524390243902439No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)