FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OODve768.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OODve768.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7361
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT263735.82393696508627No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT133418.122537698682244No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT116615.84023909794865No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGGATTAAAACCAAGACTTT5317.213693791604402No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC2843.858171444097269No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT450.6113299823393561No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT290.3939682108409183No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC290.3939682108409183No Hit
AGCCTAGACATCCACTGCTGTCTCTGGGTGGGTGGTAATGATCCTTCCGC250.33962776796630895No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT190.2581171036543948No Hit
AGCCTAGACATCCACTGCTGACGCTGCCGACGAGTGGTAATGATCCTTCC190.2581171036543948No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAGAGCAAGGACTT150.20377666077978535No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT150.20377666077978535No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGGCTT130.17660643934248063No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT120.1630213286238283No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTAAGAGCAAGGACTT120.1630213286238283No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT120.1630213286238283No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGGGCAAGGACTT120.1630213286238283No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAATAGCAAGGACTT110.14943621790517592No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTAAGAGCAAGGACTT110.14943621790517592No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATCTAGTTAAAAATAAAAACTT110.14943621790517592No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACCT110.14943621790517592No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGTAAGAGCAAGGACTT100.13585110718652357No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAGAGCAAGGACTT100.13585110718652357No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT100.13585110718652357No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT100.13585110718652357No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGTAAGAGCAAGGACTT90.12226599646787122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAAGAAGT90.12226599646787122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTC90.12226599646787122No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTGTGGATTAAAACCAAGACTTT90.12226599646787122No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT90.12226599646787122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCGAGGACTT80.10868088574921884No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAGGGACTT80.10868088574921884No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTGTAAATAAAAGCAAGGACTTT80.10868088574921884No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAGGAGCAAGGACTT80.10868088574921884No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)