FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi753.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi753.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT4424.719101123595504No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC2916.292134831460675No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT2413.48314606741573No Hit
AGCCTAGACATCCACTGCTGCCGACGACGTGGTAATGATCCTTCCGCTGT2011.235955056179774No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTT147.865168539325842No Hit
AGCCTAGACATCCACTGCTGTAGCAATAAGTGGTAATGATCCTTCCGCTG63.3707865168539324No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC21.1235955056179776No Hit
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCGTTGTTGAAAGT21.1235955056179776No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT21.1235955056179776No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGAATAAAAGTAGAGAC21.1235955056179776No Hit
GAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGA10.5617977528089888No Hit
AGCCTAGACATACACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT10.5617977528089888No Hit
TCACTTGCGGCTCGACTGGGAAACATTGTTCACACGCTCAGCCGAAGGCT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGCCGACGACGTGGTACTGATCCTTCCGCTGT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGCCGACGACGTGGTAAGATCCTTCCGCTGTC10.5617977528089888No Hit
AGCCTAGACATCCATTGCTGCCGACGACGTGGTAATGATCCTTCCGCTGT10.5617977528089888No Hit
ACACCGTGTAGTCCACCGGACACGGCGTAGGCGCCGCCGCCGAACTTGCC10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGCC10.5617977528089888No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAACT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAGTAAAAGTAGAGAC10.5617977528089888No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGTACT10.5617977528089888No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAAAGAC10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGCAAGTTGTTATCTAGTTAAAAGCAAGGACT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGTGGCAATAAGTGGTAATGATCCTTCCGCTG10.5617977528089888No Hit
AGCCTAACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTTT10.5617977528089888No Hit
TGAGTAACCGCAACATAGTTAAAACACAGTTATCCATACTAGTTAGAGAA10.5617977528089888No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.5617977528089888No Hit
AGCCTAGCATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGACT10.5617977528089888No Hit
AGCATAGACATCCACTGCTGTATCGTAGTAATGATCCTTCCGCTGTCTCT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAGAACCAAAAACTT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGTCTAGTGGTAATGATCCTTCCGCTGTCTCT10.5617977528089888No Hit
AGCCTAGACATCCACGCTGCCGACGACGTGGTAATGATCCTTCCGCTGTC10.5617977528089888No Hit
TCACTTGCGGCTCGACCGGGAAACATTGTTCACACGCTCAGCCGAAGGCT10.5617977528089888No Hit
AGTCTAGATATCCACTGCTGTCTCGTGGTAATGATTCTTTCGCTGTCTCT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATCTAGAATAAAAGTAGAGACT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCCCT10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTGCGCTGTCTCT10.5617977528089888No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT10.5617977528089888No Hit
ACCCTAGACATCCCCTGCTTCCGCCGACGTGGTTATGATTCTTTCCCTTT10.5617977528089888No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTTTATAGAATAAAAATAGAGAC10.5617977528089888No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT10.5617977528089888No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)