FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi749.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi749.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1419
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT32923.185341789992954No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT25117.688513037350244No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC1349.443269908386187No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC664.651162790697675No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTGAAAGCAGAGACT412.8893587033121917No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTCTCTT412.8893587033121917No Hit
AGCCTAGACATCCACTGCTGAGATGTGGTAATGATCCTTCCGCTGTCTCT402.8188865398167726No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT382.6779422128259336No Hit
AGCCTAGACATCCACTGCTGCGGAGATGTGGTAATGATCCTTCCGCTGTC372.6074700493305145No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT292.04369274136716No Hit
AGCCTAGACATCCACTGCTGGGAGATGTGGTAATGATCCTTCCGCTGTCT241.6913319238900635No Hit
AGCCTAGACATCCACTGCTGGGTCTCGTGGTAATGATCCTTCCGCTGTCT231.620859760394644No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC221.550387596899225No Hit
AGCCTAGACATCCACTGCTGTGTGTATAAGAGACAGTGGTAATGATCCTT181.2684989429175475No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT120.8456659619450317No Hit
AGCCTAGACATCCACTGCTGAGGTGTGGTAATGATCCTTCCGCTGTCTCT60.42283298097251587No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAGAGCAAGAATT60.42283298097251587No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT60.42283298097251587No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC60.42283298097251587No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTGAAAGCAGAGGCT50.3523608174770966No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT50.3523608174770966No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC40.28188865398167723No Hit
AGCCTAGACATCCACTGCTGGGTCTCGTGGTAATGATCCTTCCGCTGTCC30.21141649048625794No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCAGCTGTCTCTTATAC30.21141649048625794No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAATAATT30.21141649048625794No Hit
AGCCTAGACATCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACTT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGGGTCTGGTGGTAATGATCCTTCCGCTGTCT20.14094432699083861No Hit
AGCCTAGACATACACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATACTTCCGCTGTCTCTTATAC20.14094432699083861No Hit
AGCCTAGACATCCACTGCTTAAAGTTGCTATTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAGAAGCAAGAATT20.14094432699083861No Hit
AGCCAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATTT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGTACT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGCGGAGGTGTGGTAATGATCCTTCCGCTGTC20.14094432699083861No Hit
AGCCTAGACATCCATTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC20.14094432699083861No Hit
AGCCTAGACATCTACTGCTGAGATGTGGTAATGATCCTTCCGCTGTCTCT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAAATTT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTCAAAAGCAAGGACT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGTTAAAAGCAAGGACT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTTAAAAGCAAGGACT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCCATTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGCCTAGATATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCTGCTGTC20.14094432699083861No Hit
AGCCTAGACATACACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC20.14094432699083861No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT20.14094432699083861No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTATCTTATAC20.14094432699083861No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)