FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi748.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi748.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences862
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC53762.2969837587007No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT698.004640371229698No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC283.248259860788863No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGATCCTTCCGCTGTCTCTTA202.320185614849188No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT202.320185614849188No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC171.9721577726218096No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT151.740139211136891No Hit
AGCCTAGACATCCACTGCTGCCACGGTGGTAATGATCCTTCCGCTGTCTC91.0440835266821344No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC70.8120649651972157No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTTAAAAGCAAGGACT40.46403712296983757No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTATAATAAAAGTAGAGAC30.34802784222737815No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGGGAC30.34802784222737815No Hit
AGCCTAGACATCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGACT30.34802784222737815No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTGAAAGT20.23201856148491878No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAACGCAAGGACTT20.23201856148491878No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAT20.23201856148491878No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGTAGAGAC20.23201856148491878No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGAATAAAAGTAGAGAC20.23201856148491878No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAGTAAAAGTAGAGAC20.23201856148491878No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGAATAAAAGTAGAGAC20.23201856148491878No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT20.23201856148491878No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTATAGAC20.23201856148491878No Hit
AACCCAGACATCCACTGCTGAAAGTTGTTTTTTAAAAAAAAAAAAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCAAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGTAAAAGCAAGGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATACTTCCGCTGTCTC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTTGTCTCGTGGTAATGATCCTTCCGCTGTCTC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGTAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTTTTGTATATAATCACAATAGCTAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTATTATCTAGTAAAAGCAATGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGCAGAATAAAAGTAGAGAC10.11600928074245939No Hit
CGCCTAGACATCCCCTGCTTAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGGATAAAAGTGGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAATAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCACAGACT10.11600928074245939No Hit
AGCCTAGACACCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAACTAGAGAC10.11600928074245939No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAG10.11600928074245939No Hit
AGCCTAGACATCCACTCCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGATCCTTCCGCTGTCGCTTA10.11600928074245939No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGAGACTT10.11600928074245939No Hit
ATATCCCTTTTACTTCTTCCTGCCACTCCCCCCTCCTGGCGAGATTTTCC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCACGGTGGTAATGATCTTCCGCTGTCTCT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGGAATGATCCTTCCGCTGTCTC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGATCCTTTCGCTGTCTCTTA10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGGC10.11600928074245939No Hit
ACGCCGTGCAGACCTCCCGACACCTTGTACGCGTTGTCGTCCGACGTGTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGGGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTTAAAAGCAAGGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGGTATCTAGTTAAAAGCAGAGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAGGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATTCACTGCTGCCACGGTGGTAATGATCCTTCCGCTGTCTC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAGAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACCT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGAATAAAAATAACGAC10.11600928074245939No Hit
AGCCTAGACATCCATGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGATCCTTCAGCTGTCTCTTA10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTTAGTTAAAAGCAAGGACT10.11600928074245939No Hit
AGCCAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAACAAGCACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTAAAAGCAAGGACTT10.11600928074245939No Hit
AGCCTAGATATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
CCGCTGCGTTCTTCATCGATGCGCAAGCCAAGATATCCGTTGTTGAAAGT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCCAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAGAAGCAAGGACTT10.11600928074245939No Hit
AGCCTATACCTCCACTTCTGAAAGTTGTTATCTAAAAAAAAAATAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGTAAAAGCAAGGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGATAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGCATAAAAAAAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTAAAAGCAAGGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGGTCTAGTGGTAATGATCCTTCCGTGTCTCT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAAAC10.11600928074245939No Hit
AGCCTAGACAACCACTGCTAAAAGTAGTGATAGAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGATGAAAGTTGTTATCTAGTTAAAAGCAAGGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAGGTAGAGAC10.11600928074245939No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGTACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGATCATTCCGCTGTCTCTTA10.11600928074245939No Hit
AGCCTAGCATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGATACTT10.11600928074245939No Hit
AGACTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGGCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCCGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGATAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTGGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGAAATCCACTGCTGCCACGGTGGTAATGATCCTTCCGCTGTCTC10.11600928074245939No Hit
CCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGACTT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT10.11600928074245939No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGAGT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTGATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTGGGGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGTTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
TCACTTGCGGCTGAACTGGGAGACGTTGTTTACCCGCTCGGCTGATGGTG10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAAAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAGGCAAGGACT10.11600928074245939No Hit
AGCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACTT10.11600928074245939No Hit
AGCCTAGACATCCCCCGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGGC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGCC10.11600928074245939No Hit
AGCCTAGACTCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGATACTTCCGCTGTCTCTTA10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAGAAGCAAGGACT10.11600928074245939No Hit
AGCTTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT10.11600928074245939No Hit
CGCCTAGATATCCACTGCTGAAGGTTGTTATCTAGTTAAAAGCAAGGACT10.11600928074245939No Hit
AGACTAGACATCCACTGCTGGTCTCGTGGAAATGATCCTTCAGCTGTCAC10.11600928074245939No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTATTGTC10.11600928074245939No Hit
AGCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGACT10.11600928074245939No Hit
AGACTAGACATCCACTGCTGCCGTGGTAATCCGCTGTCTCTTATACACAT10.11600928074245939No Hit
AGCCTAGGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCATTCCGCTGTCTC10.11600928074245939No Hit
AGCCTAGAAATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC10.11600928074245939No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGTC10.11600928074245939No Hit
ACACCATTCATACATCGATGTGCCTTGTTCTCACCAACACCAATATTGCC10.11600928074245939No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAGGTAGAGAC10.11600928074245939No Hit
AGCTTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAGAAGTAGAGAC10.11600928074245939No Hit
AGCCTAGACATCCACTGCTGCCGTGGTAATGGTCCTTCCGCTGTCTCTTA10.11600928074245939No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)