FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi740.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi740.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences811
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC61075.2157829839704No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT516.288532675709001No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC121.4796547472256474No Hit
AGCCTAGACATCCACTGCTGACGACGTGGTAATGATCCTTCCGCTGTCTC101.2330456226880395No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT70.8631319358816275No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC60.7398273736128237No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGAATAAAAGTAGAGAC50.6165228113440198No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT50.6165228113440198No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC50.6165228113440198No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC40.4932182490752158No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGGATAAAAGTAGAGAC40.4932182490752158No Hit
AGCCTAGACATCCACTGCTGTCTGTGGTAATGATCCTTCCGCTGTCTCTT30.36991368680641185No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAAGTAGAGAC30.36991368680641185No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.36991368680641185No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGGGAC30.36991368680641185No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.36991368680641185No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGAATAAAAGTAGAGAC30.36991368680641185No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC20.2466091245376079No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGAATAAAAGTAGAGAC20.2466091245376079No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAGAAGTAGAGAC20.2466091245376079No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGATAC20.2466091245376079No Hit
TCACTTGCGGTTCGACTGGGAAACATTGTTCACACGCTCAGCCGAAGGCT20.2466091245376079No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT20.2466091245376079No Hit
AGCATAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTGGAGAC10.12330456226880394No Hit
AGCCTAGACACTTACTGCTGAAAGTTGCTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
TCACTTGCGGCTCGACTGGGAAACATTGTTCACACGCTCAGCCGAAGGCT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAGGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAGTAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACAATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGAC10.12330456226880394No Hit
AGCCTGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTGGAGACT10.12330456226880394No Hit
AGGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTGCGCTGTC10.12330456226880394No Hit
AGCCTAGACATCCGCTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
ATCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGATATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATCTAGAATAAAAGTAGAGACT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGAATAAAAGTAGAGAC10.12330456226880394No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAGAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGAAGAGAC10.12330456226880394No Hit
TCACTTGCGGTTGGACTGGGAAACATTGTTCACACGCTCAGCCGAAGGCT10.12330456226880394No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGTTGCCGACGAGTGGTAATGATCCTTCCGCTGTC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAAACT10.12330456226880394No Hit
TTTTAGCCCTCCTTTTTCCTCTCCTCTCTCCCCCTCGTCCTTATTTCTCC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGGTATCTAGTTAAAAGCAAGGATT10.12330456226880394No Hit
AGCTAGACATCCACTGCTGACGACGTGGTAATGATCCTTCCGCTGTCTCT10.12330456226880394No Hit
CCACTAGACATCCCCTGCTGAAAGTTTTTTTCTAAAAAAAAAGTATAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGAATAAAAGCAGAGAC10.12330456226880394No Hit
TCACTTGCGGTTGGACTGGGAAACATTGTTCACACGCTCAGCCGAGGGCT10.12330456226880394No Hit
TGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT10.12330456226880394No Hit
AGCCTAGACATCCACTGTTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTTTTATAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAAAATAAAAGTAGAGAC10.12330456226880394No Hit
AACCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGCC10.12330456226880394No Hit
TCACTTGCGGCTGAACCGGGAAACATTGTTCACACGCTCAGCCGAAGGCT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAAAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
ACCCCATGAAATCCGCCCGACACCTTGTAGGCATTGTCGTCCAATGTGTT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAATTGTTATCTAAAATAAAAATAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGGTAATGATCCTTCCGCTGTCTCTTATACAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGTATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTTGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTATTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAAGTAGAGGC10.12330456226880394No Hit
AGCCTAGACATCCACTGCGGAAAGTTGTTATCTAGAATAAAAGTAGAGAC10.12330456226880394No Hit
AGCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGACT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATTAAAGTAGAGAC10.12330456226880394No Hit
AGCCTAGACATCAACTGCTGTCTGTGGTAATGATCCTTCCGCTGTCTCTT10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGTAAGAGCAAGGACTT10.12330456226880394No Hit
TCACTTGCGGTTGGACTGGGAAACATTGTTCACACGCCCAGCCGAAGGCT10.12330456226880394No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGGC10.12330456226880394No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGAATAGAAGTAGAGAC10.12330456226880394No Hit
AGACTAGACATCCACTGCTGACGACGTGGTAATGATCCTTCCGCTGTCTC10.12330456226880394No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT10.12330456226880394No Hit
AGCCTAGACATTCACCGTCGTCTCGTGGTAATGATCCTTCCGCCGTCCCT10.12330456226880394No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)