FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi735.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi735.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8246
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT549166.58986175115207No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT6207.518796992481203No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATTGATTAAAACCAAAGACTT1251.5158864904195974No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTAAGGTTAAAACCAAAGACTTT1001.2127091923356779No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT881.0671840892553965No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT831.0065486296386126No Hit
AGCCTAGACATCCACTGCTGGTGGTAATGATCCTTCCGCTGTCTCTTATA720.8731506184816881No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAGAACCAAAGACTT660.8003880669415474No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGGCTT550.6669900557846229No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATTGATTAAAACCAAAGACTT350.4244482173174873No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT340.41232112539413046No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAGGACTT310.37593984962406013No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCGAAGACTT310.37593984962406013No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACAAAAGACTT270.32743148193063304No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAGAGACTT260.3153043900072763No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGGTTAAAACCAAAGACTT260.3153043900072763No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT250.30317729808391947No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT250.30317729808391947No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACCT250.30317729808391947No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAGCCAAAGACTT220.26679602231384913No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATTGATTAAAACCAAAGACTT220.26679602231384913No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATTGATTAAAACCAAAGACTT210.2546689303904924No Hit
AGCCTAGACATCCACTGCTGAAAGTTATTATTGATTAAAACCAAAGACTT210.2546689303904924No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTGATTAAAACCAAAGACTT210.2546689303904924No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACTGATTAAAACCAAAGACTT200.2425418384671356No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATTGATTAAAACCAAAGACTT200.2425418384671356No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAGACCAAAGACTT200.2425418384671356No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCCAAGACTT190.2304147465437788No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTTATTAAAACCAAAGACTT190.2304147465437788No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTC190.2304147465437788No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATTGATTAAAACCAAAGACTT170.20616056269706523No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCGATTAAAACCAAAGACTT160.19403347077370847No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTTGATTAAAACCAAAGACTT150.18190637885035169No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATTGATTAAAACCAAAGACTT150.18190637885035169No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT150.18190637885035169No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT150.18190637885035169No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTAATTAAAACCAAAGACTT140.1697792869269949No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT130.15765219500363814No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGACTAAAACCAAAGACTT120.14552510308028135No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAATACTT100.1212709192335678No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT100.1212709192335678No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT100.1212709192335678No Hit
AGCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTTT100.1212709192335678No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAATCAAAGACTT100.1212709192335678No Hit
AGCCTAGACATCCACTGCTGTAAGTTGTTATTGATTAAAACCAAAGACTT90.10914382731021101No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTAAGGCTAAAACCAAAGACTTT90.10914382731021101No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTGAAACCAAAGACTT90.10914382731021101No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)