FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi734.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi734.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4852
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT307363.33470733718054No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT3186.553998351195384No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC2084.286892003297609No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT611.2572135201978565No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT491.0098928276999175No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC400.8244023083264632No Hit
AGCCTAGACATCCACTGCTGCCGACGACGTGGTAATGATCCTTCCGCTGT340.7007419620774938No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT320.6595218466611706No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGTACT320.6595218466611706No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGGCT220.4534212695795548No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTTAAAAGCAAGGACT220.4534212695795548No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACC200.4122011541632316No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT190.39159109645507006No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTTAAAAGCAAGGACT180.3709810387469085No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTTAAAAGCAAGGACT140.2885408079142622No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC140.2885408079142622No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGTTAAAAGCAAGGACT140.2885408079142622No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT130.2679307502061006No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAATGACT120.24732069249793898No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGTTAAAAGCAAGGACT120.24732069249793898No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAAGGACT120.24732069249793898No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAGGCAAGGACT110.2267106347897774No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCGAGGACT110.2267106347897774No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGTTAAAAGCAAGGACT100.2061005770816158No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGTTAAAAGCAAGGACT100.2061005770816158No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGTTAAAAGCAAGGACT100.2061005770816158No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGCTAAAAGCAAGGACT90.18549051937345426No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTGAAAGCAAGGACT90.18549051937345426No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAGAGCAAGGACT80.16488046166529266No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTTAAAAGCAAGGACT80.16488046166529266No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT80.16488046166529266No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAGAAGCAAGGACT80.16488046166529266No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTTAAAAGCAAGGACT80.16488046166529266No Hit
AGCCTAGACATCCACTGTTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT70.1442704039571311No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC70.1442704039571311No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGGGACT70.1442704039571311No Hit
AGCCTAGACATCCATTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT70.1442704039571311No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGTTAAAAGCAAGGACT70.1442704039571311No Hit
AGCCTAGACACCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT60.12366034624896949No Hit
AGACTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT60.12366034624896949No Hit
AGCCTAGACATCCACTGCTGGTGGTAATGATCCTTCCGCTGTCTCTTATA60.12366034624896949No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGAAAGGACT60.12366034624896949No Hit
AGCCTAGACATCCCCTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit
AGCCTAGACATCCACTGATGAAAGTTGTTATCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit
AGCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACTT50.1030502885408079No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCATCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit
AGCCTAGACATCCACTGCTGAAGGTTTGTGGAAGTGAACGCAAAAACTTT50.1030502885408079No Hit
AGTCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit
AGCCTAGACATCCACTGCCGAAAGTTGTTATCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAACGCAAGGACT50.1030502885408079No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGTTAAAAGCAAGGACT50.1030502885408079No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)