FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi725.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi725.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8563
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT358141.81945579820157No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACT195322.807427303515123No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT6267.310522013313091No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT2202.569193039822492No Hit
AGCCTAGACATCCACTGCTGTTCGTGGTAATGATCCTTCCGCTGTCTCTT1501.751722527151699No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC1481.7283662267896767No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC1121.3079528202732686No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC730.8525049632138268No Hit
AGCCTAGACATCCACTGCTGGCGTCAGATGTGGTAATGATCCTTCCGCTG680.7941142123087703No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT540.6306201097746117No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGTAGAGACT440.5138386079644984No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAGGCAGAGACT370.43209155669741917No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATCTAGTTAAAAGCAGAGACT360.4204134065164078No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGGGACT350.4087352563353965No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT320.37370080579236253No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACC270.31531005488730585No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCGGAGACT220.2569193039822492No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTTAAAAGCAGAGACT210.24524115380123787No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGCTAAAAGCAGAGACT190.22188485343921524No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACT170.19852855307719258No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGGCT160.18685040289618127No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTACCTAGTTAAAAGCAGAGACT160.18685040289618127No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGATACT160.18685040289618127No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATCTAGTTAAAAGCAGAGACT150.1751722527151699No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCCATCTAGTTAAAAGCAGAGACT140.16349410253415858No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACC140.16349410253415858No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTCTAGTTAAAAGCAGAGACT130.15181595235314727No Hit
AGCCTAGACATCCACTGCTGAAAGCTGCTATCTAGTTAAAAGCAGAGACT130.15181595235314727No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGACT120.14013780217213592No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGGGACT120.14013780217213592No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTTAAAAGTAGAGACT120.14013780217213592No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT120.14013780217213592No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAGAAGCAGAGACT110.1284596519911246No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTGGTTAAAAGCAGAGACT110.1284596519911246No Hit
AGCCTAGACATCCACTGCTTAAAGTTGCTATCTAGTTAAAAGCAGAGACT110.1284596519911246No Hit
AGCCTAGACATCCACTGCTGAAAGTCGCTATCTAGTTAAAAGCAGAGACT110.1284596519911246No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCATAGACT100.11678150181011328No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGTAGAGGCT100.11678150181011328No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT100.11678150181011328No Hit
CGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT100.11678150181011328No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTTAAAAGTAGAGACT90.10510335162910195No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAGAGCAGAGACT90.10510335162910195No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGATACT90.10510335162910195No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGTTAAAAGTAGAGACT90.10510335162910195No Hit
AGCCTATACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT90.10510335162910195No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)