FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi724.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi724.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1561
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT93359.76937860345932No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC16910.826393337604099No Hit
AGCCTAGACATCCACTGCTGTCTGTGGTAATGATCCTTCCGCTGTCTCTT996.342088404868675No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT473.0108904548366433No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTTCAAAGCAAGAACT130.8327994875080076No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTCCAAAGCAAGAACT90.5765534913516976No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGAGACTT80.5124919923126201No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCATTCCGCTGTCTCTTATAC80.5124919923126201No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC60.38436899423446513No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAGGAACT60.38436899423446513No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC60.38436899423446513No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT60.38436899423446513No Hit
AGCCTAGACATTCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT60.38436899423446513No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT50.3203074951953876No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATCTAGTTCAAAGCAAGAACT50.3203074951953876No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCAAGTTCAAAGCAAGAACT50.3203074951953876No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCGAAGCAAGAACT50.3203074951953876No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT40.25624599615631005No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAGAGCAAGAACT40.25624599615631005No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAGGCAAGAACT40.25624599615631005No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATCTAGTTCAAAGCAAGAACT30.19218449711723257No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATCTAGTTCAAAGCAAGAACT30.19218449711723257No Hit
AGCCTAGACATACACTGCTGTCTGTGGTAATGATCCTTCCGCTGTCTCTT30.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAAGTTACTATCTAGTTCAAAGCAAGAACT30.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAAGAACT30.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACC30.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGGACT30.19218449711723257No Hit
AGCCTAGACATCCACTGCTGCCGACGGTGGTAATGATCCTTCCGCTGTCT30.19218449711723257No Hit
AGCCTAGACATCCACTGCTTAAAGTTGCTATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTACCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACTT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTTTCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGTCTGTGGTAATGATCCTTCAGCTGTCTCTT20.12812299807815503No Hit
AGCCTATACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGTCTGTGGTAATGATCCTTCCGCTGTATCTT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGGGGTAATGATCCTTCCGCTGTCTCTTATAC20.12812299807815503No Hit
AGCCCAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT20.12812299807815503No Hit
AGCTTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAGCT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCCATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTCGCTATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCGAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTAACA20.12812299807815503No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATACA20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTGGTTCAAAGCAAGAACT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTCAAAGCAAGAATT20.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCCAGTTCAAAGCAAGAACT20.12812299807815503No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)