FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi717.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi717.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2195
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT52724.009111617312072No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC33715.353075170842825No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT31514.350797266514807No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT1968.929384965831435No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC1406.378132118451026No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGCTCGGAGATGTGGTAATGATC964.373576309794989No Hit
AGCCTAGACATCCACTGCTGCCGACGATGTGGTAATGATCCTTCCGCTGT904.100227790432802No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC723.2801822323462417No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT522.369020501138952No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT100.45558086560364464No Hit
AGCCTAGACATCCACTGCTGCCGACGGTGGTAATGATCCTTCCGCTGTCT70.31890660592255127No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC40.18223234624145787No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGCTCGGAGATGTGGTAATTATC40.18223234624145787No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATTTAATTAAAAGCAAGAATT40.18223234624145787No Hit
AGCCTAGACATCCACTGCTGAAAATTGTTGTAAATAAAAGCAAGGACTTT40.18223234624145787No Hit
AGCCTAGACATCCACTGCTGAAAGCTGCTATTTAATTAAAAGCAAGAATT30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTGATTAAAAGCAAGAATT30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGAATAAAAGCAGAGAC30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTTAAAAGCAAGAACT30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACCTT30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTATC30.1366742596810934No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC30.1366742596810934No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC30.1366742596810934No Hit
CCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATTTT30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGCCGACGATGTGGTAATGATTCTTCCGCTGT30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTTGAATAAAAGCAGAGAC30.1366742596810934No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGAACTT30.1366742596810934No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)