FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi713.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi713.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences192
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC4422.916666666666664No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT4422.916666666666664No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT2211.458333333333332No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC189.375No Hit
AGCCTAGACATCCACTGCTGTTCGCTCAGATGTGGTAATGATCCTTCCGC168.333333333333332No Hit
AGCCTAGACATCCACTGCTGTGTGGTAATGATCCTTCCGCTGTCTCTTAT105.208333333333334No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC31.5625No Hit
AGCCTAGACATCCACTGCTGCCGACGTGTGGTAATGATCCTTCCGCTGTC31.5625No Hit
AGCCTAGACATCCACTGCCGAAAGTTGTTATCTAGTAAAAGCAAGGACTT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATTCTTCCGCTGTT10.5208333333333333No Hit
AGCCTAGACATACACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAGAGCAGAGAC10.5208333333333333No Hit
ACCCTAGAAATCCTCCTCTGTTCTCCCCGGTGTTGTATATAATCTTCCCC10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGTCCGCTCAGATGTGGTAATGATCCTTCCGC10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTTTCT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTATAAAAAAAAAAGAGTT10.5208333333333333No Hit
AGCCTAGACCATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATA10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGGCTT10.5208333333333333No Hit
AGCCTAGACATTCACTGCTGCCGACGAGCGGTAATGACCCTTCCGCTGTT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGTTCGCTAAGATGTGGTAATGATCCTTCCGC10.5208333333333333No Hit
ACGCTTAACATCCATCCCTGTGGCTGTGTGTATTCACTTTCCGCCTTTCC10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGACGAGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
AGCCTAGACATCCACTGCCGTCTCGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGCCGACTAGTGGTAATGTTCCTTCCGCTGTC10.5208333333333333No Hit
AGCTAGACATCCACTGCTGTTCGATCAGATGTGGTAATGATCCTTCCGCT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGTATCGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
AGTTTAGACCGTTACTGTTGTCCTGTGGAAGTGACTATGTTGCTGCTTGT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTA10.5208333333333333No Hit
AGCCTAGACATTCCCTCCATTCCATGACCGGTAATGACCTTTCCGCTTTT10.5208333333333333No Hit
AGTCTAGACATCCACTGCTGACAGTTGTTATCAAGTAATAACACGGACGT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGTCCCGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
CGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCTGCTGTC10.5208333333333333No Hit
AGCCTAGACATCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTTT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAAAGCAAGGACTT10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATACTTCCGCTGTC10.5208333333333333No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT10.5208333333333333No Hit
AGCCTAGACATACACTGGTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT10.5208333333333333No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCGAGTAAAAGCAAGGACTT10.5208333333333333No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)