FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi712.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi712.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5413
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT278051.357842231664506No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT63711.767966007759098No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT4287.906890818400147No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC851.5702937372990948No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTCTCTTA731.348605209680399No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC681.2562349898392757No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT551.0160724182523555No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGGCTCGGAGATGTGGTAATGAT551.0160724182523555No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAACGCAAGGACTT540.9975983742841308No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAAGACTT420.775909846665435No Hit
AGCCTAGACATCCACTGCTGTTCTCGTGGTAATGATCCTTCCGCTGTCTC420.775909846665435No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGAACTT280.5172732311102901No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACCT210.3879549233327175No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTAAAAGCAAGGACTT190.35100683539626826No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTAAAAGCAAGGACTT190.35100683539626826No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTC190.35100683539626826No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAGAAGCAAGGACTT190.35100683539626826No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAGGGACTT170.31405874745981893No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGTAAAAGCAAGGACTT170.31405874745981893No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT160.2955847034915943No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAGGCAAGGACTT150.27711065952336966No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTAAAAGCAAGGACTT130.2401625715869204No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAAGGACTT130.2401625715869204No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAAGACCT130.2401625715869204No Hit
AGCCTAGACATCCACTGCTGAAGTTGTTATCTAGTAAGAGCAAGGACTTT120.22168852761869576No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCGAGGACTT120.22168852761869576No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT110.2032144836504711No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGGCTT100.18474043968224643No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAAAGCAAGGACTT100.18474043968224643No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGTAAAAGCAAGGACTT90.1662663957140218No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTAAAAGCAAGGACTT90.1662663957140218No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGTAAAAGCAAGGACTT90.1662663957140218No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT90.1662663957140218No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGGCTT90.1662663957140218No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT80.14779235174579716No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGTAAAAGCAAGGACTT80.14779235174579716No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT80.14779235174579716No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGTAAGAGCAAGGACTT80.14779235174579716No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAATGACTT70.12931830777757253No Hit
AGCCAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTTT70.12931830777757253No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT70.12931830777757253No Hit
AGCCTAGACATCCATGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTTT70.12931830777757253No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAGCAAGGACTTT70.12931830777757253No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTGAAAGCAAGGACTT70.12931830777757253No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAGGACTT60.11084426380934788No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAATAAAAGCAAGGACTT60.11084426380934788No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATTGATTAAAACCAAAGACTT60.11084426380934788No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT60.11084426380934788No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)