FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi705.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi705.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2286
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT83236.39545056867892No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT56424.671916010498688No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT23810.411198600174979No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT1305.68678915135608No Hit
AGCCTAGACATCCACTGCTGCCGACGATGTGGTAATGATCCTTCCGCTGT954.15573053368329No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATTGAATTTAATAACAACCGCT140.6124234470691163No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACC120.5249343832020997No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAAGGACT110.4811898512685914No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT90.39370078740157477No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT90.39370078740157477No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAGGCAGAGACT90.39370078740157477No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTACCTAGTTAAAAGCAGAGACT90.39370078740157477No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAGAGCAGAGACT80.3499562554680665No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATTTAATTAAAAGCAAGAATT70.30621172353455817No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAACTAAAAGCAAGAATT60.26246719160104987No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAACT60.26246719160104987No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATC50.21872265966754156No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACC50.21872265966754156No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT50.21872265966754156No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT50.21872265966754156No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTGATTAAAAGCAAGAATT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAGGAATT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAGAGACTT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTTAAAAGCAGAGACT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCCAGTTAAAAGCAGAGACT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATCTAGTTAAAAGCAGAGACT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATCTAGTTAAAAGCAGAGACT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATTTAATTAAAAGCAAGAATT40.17497812773403326No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATGTAGTTAAAAGCAGAGACT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCGGAGACT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTCAATTAAAAGCAAGAATT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGAAAGCTGCTATTTAATTAAAAGCAAGAATT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAATTAAAAGCAAGAATT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGCCGACGGTGTGGTAATGATCCTTCCGCTGT30.13123359580052493No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT30.13123359580052493No Hit
CGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAGGCAAGAATT30.13123359580052493No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCGAGAATT30.13123359580052493No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT30.13123359580052493No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)