FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi703.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi703.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8854
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT357140.332053309238766No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT152117.178676304495145No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT136415.405466455839168No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT4224.7662073639033204No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAAACTT3433.8739552744522254No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT840.9487237406821775No Hit
AGCCTAGACATCCACTGCTGGTGTGGTAATGATCCTTCCGCTGTCTCTTA420.47436187034108873No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT340.3840072283713576No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCAATAAAAGCAAGGACTTT270.3049469166478428No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGGGCAAGGACTT230.2597695956629772No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT220.2484752654167608No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAGAGCAAGGACTT190.2145922746781116No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACCT190.2145922746781116No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAAGACT180.20329794443189517No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTAAGAGCAAGGACTT180.20329794443189517No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTAAGAGCAAGGACTT170.1920036141856788No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGTAAGAGCAAGGACTT170.1920036141856788No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAGAGCAAGGACTT170.1920036141856788No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC160.1807092839394624No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT160.1807092839394624No Hit
AGCCTAGACATCCACTGCTGAAAGTCTGTGGAAGTAAACGCAAAAACTTT160.1807092839394624No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTTTGGGTTAAAACCAAAGACTT150.169414953693246No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT140.1581206234470296No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT140.1581206234470296No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT140.1581206234470296No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT130.1468262932008132No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAGGGACTT130.1468262932008132No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGTAAGAGCAAGGACTT120.1355319629545968No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTC120.1355319629545968No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTCTAGTAAGAGCAAGGACTT120.1355319629545968No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAGGCAAGGACTTT120.1355319629545968No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAGGAGCAAGGACTT120.1355319629545968No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATATAGTAAGAGCAAGGACTT110.1242376327083804No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTC110.1242376327083804No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTAAGAGCAAGGACTT110.1242376327083804No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAATAGCAAGGACTT110.1242376327083804No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGTACTT110.1242376327083804No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAGACGCAAAAACTTT100.112943302462164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAGTAAAAGCAAGGACTTT100.112943302462164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTTGATTAAAACCATAAACTT100.112943302462164No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTGTAAATAAAAGCAAGGACTTT100.112943302462164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGGCTT100.112943302462164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGTAAGAGCAAGGACTT100.112943302462164No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGATTT90.10164897221594758No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT90.10164897221594758No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT90.10164897221594758No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT90.10164897221594758No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGGAGTAAACGCAAAAACTTT90.10164897221594758No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)