FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi700.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi700.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2016
Sequences flagged as poor quality0
Sequence length301
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC109754.41468253968254No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT51425.496031746031743No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT653.2242063492063497No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAGGGACTT120.5952380952380952No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC80.3968253968253968No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC70.3472222222222222No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC60.2976190476190476No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGAATAAAAGTAGAGAC60.2976190476190476No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTATAGAC60.2976190476190476No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCCAGAATAAAAGTAGAGAC60.2976190476190476No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGAATAAAAGTAGAGAC50.248015873015873No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT50.248015873015873No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAGAGTAGAGAC50.248015873015873No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGGC50.248015873015873No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAGAAGTAGAGAC50.248015873015873No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAAAGAC50.248015873015873No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGGATAAAAGTAGAGAC50.248015873015873No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC50.248015873015873No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT40.1984126984126984No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATCTAGAATAAAAGTAGAGAC40.1984126984126984No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATCTAGTAAAAGCAGGGACTT40.1984126984126984No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTATCTAGAATAAAAGTAGAGAC40.1984126984126984No Hit
AGCCTAGACATCCACTGCTGAAAGTTTCTATCTAGTAAAAGCAGGGACTT40.1984126984126984No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGGCTT40.1984126984126984No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC30.1488095238095238No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGTAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTATAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCATGGACTT30.1488095238095238No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGGCATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTGGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTC30.1488095238095238No Hit
AGCCTAGACATCCACTGCCGAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCATCTAGAATAAAAGTAGAGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGGGAC30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTAAAAGCAGGGACTT30.1488095238095238No Hit
AGCCTAGACATCCACTGTTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATATAGTAAAAGCAGGGACTT30.1488095238095238No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGTGACTT30.1488095238095238No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)