FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi697.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi697.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20730
Sequences flagged as poor quality0
Sequence length301
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT1375866.36758321273517No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC216210.429329474191992No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT4612.223830197780994No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT3751.808972503617945No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT1320.6367583212735167No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC910.4389773275446213No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACCTT820.39556198745779064No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT750.361794500723589No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAGAAACTTT730.35214664737095996No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCGAAAACTTT710.34249879401833094No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTCT690.33285094066570187No Hit
AGCCTAGAAATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT680.32802701398938733No Hit
AGCCTAGACATCCACTGCTGAAAGTTCGTGGAAGTAAACGCAAAAACTTT600.2894356005788712No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAGACGCAAAAACTTT600.2894356005788712No Hit
AGCCTAGACATCCACTGCTGAAGGTTTGTGGAAGTAAACGCAAAAACTTT580.27978774722624217No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGGAGTAAACGCAAAAACTTT570.27496382054992763No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAGGTAAACGCAAAAACTTT570.27496382054992763No Hit
AGCCTAGACATCCACTGCTGAAAGTCTGTGGAAGTAAACGCAAAAACTTT560.27013989387361315No Hit
AGCCTAGACATCCACTGCTGAGAGTTTGTGGAAGTAAACGCAAAAACTTT550.2653159671972986No Hit
CGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT550.2653159671972986No Hit
AGACTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT520.25084418716835505No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAGCGCAAAAACTTT520.25084418716835505No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAGACTTT510.24602026049204054No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAGAACTTT500.241196333815726No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGCGGAAGTAAACGCAAAAACTTT490.2363724071394115No Hit
AGCCTAGACATCCACTGCTGGAAGTTTGTGGAAGTAAACGCAAAAACTTT470.2267245537867824No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTC460.2219006271104679No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGCAAACGCAAAAACTTT450.21707670043415342No Hit
AGCCTAGACATCCACTGCTGAAAGCTTGTGGAAGTAAACGCAAAAACTTT440.21225277375783888No Hit
AGCCTAGACATCAACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT420.20260492040520983No Hit
AGCCTAGACATCCACTGCTAAAAGTTTGTGGAAGTAAACGCAAAAACTTT410.19778099372889532No Hit
AGCCTAGACATCCACTGCTTAAAGTTTGTGGAAGTAAACGCAAAAACTTT400.1929570670525808No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAGCTTT380.18330921369995176No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT360.1736613603473227No Hit
AGCCTATACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT330.15918958031837918No Hit
AGCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTTC290.13989387361312108No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT280.13506994693680657No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC260.12542209358417752No Hit
AGCCTAGATATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT250.120598166907863No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGAAAGTAAACGCAAAAACTTT250.120598166907863No Hit
AGCCTAGACATCCACTGCTGAAAATTTGTGGAAGTAAACGCAAAAACTTT230.11095031355523395No Hit
AGCCTAGACATCTACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT210.10130246020260492No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)