FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi692.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi692.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1363
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT72753.338224504768895No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC22716.654438738077772No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT906.603081438004402No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC231.6874541452677916No Hit
AGCCTAGACATCCACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCTTAT171.247248716067498No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT110.8070432868672046No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT90.6603081438004402No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC70.5135730007336757No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTCTCTTA70.5135730007336757No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT70.5135730007336757No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTC50.36683785766691124No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC40.293470286133529No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATTGATTAAAACCAAAGACTT40.293470286133529No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT40.293470286133529No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGAATAAAAGCAGAGAC40.293470286133529No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGGCTT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAGCCAAAGACTT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATTGATTAAAACCAAAGACTT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGGTTAAAACCAAAGACTT30.22010271460014674No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC30.22010271460014674No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACCT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACTGATTAAAACCAAAGACTT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGACTAAAACCAAAGACTT30.22010271460014674No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT30.22010271460014674No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT30.22010271460014674No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTTATTAAAACCAAAGACTT20.1467351430667645No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAGAGACTT20.1467351430667645No Hit
AGCCTAGACATCTACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATAGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTACAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCGATTAAAACCAAAGACTT20.1467351430667645No Hit
GAGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACT20.1467351430667645No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTGTAAATAAAAGCAAGGACTTT20.1467351430667645No Hit
AGCCTAGACATCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTTT20.1467351430667645No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC20.1467351430667645No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGTGTGGTAATGATCCTTCCGCTGTCTCTTAT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGCAAGTTGTTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT20.1467351430667645No Hit
AGCCTAGGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAATGACTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGAATAAAAGCAAGGACTTT20.1467351430667645No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAGACCAAAGACTT20.1467351430667645No Hit
GCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTTT20.1467351430667645No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)