FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi691.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi691.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4190
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT160338.25775656324583No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT52412.505966587112171No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATCTAGTTAAGAGTAAAAACTT3859.188544152744631No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC1714.081145584725537No Hit
AGCCTAGACATCCACTGCTGGAGATGTGGTAATGATCCTTCCGCTGTCTC1303.1026252983293556No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC932.2195704057279237No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC842.0047732696897373No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT842.0047732696897373No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT801.9093078758949882No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC571.360381861575179No Hit
AGCCTAGACATCCACTGCTGAGTGGTAATGATCCTTCCGCTGTCTCTTAT521.2410501193317423No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT410.9785202863961814No Hit
AGCCTAGACATCCACTGCTGTCTCTTATACACATCTGACGCTGCCGACGA340.8114558472553699No Hit
AGCCTAGACATCCACTGCTGTGTATAAGAGACAGTGGTAATGATCCTTCC260.6205250596658711No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT200.47732696897374705No Hit
AGCCTAGACATCCACTGCTGAAAGCTGCTATCTAGTAAAAGCAGGGACTT100.23866348448687352No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT90.21479713603818618No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAAGGACTT90.21479713603818618No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT90.21479713603818618No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCCAGTAAAAGCAGGGACTT90.21479713603818618No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAGGCAGGGACTT80.1909307875894988No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTAAAAGCAGGGACTT80.1909307875894988No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGAGACTT80.1909307875894988No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAGAAGCAGGGACTT80.1909307875894988No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGTACTT70.16706443914081145No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT70.16706443914081145No Hit
AGCCTAGACATCCACTGCTAAAAGTTGCTATCTAGTAAAAGCAGGGACTT60.1431980906921241No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTC60.1431980906921241No Hit
AGCCTAGACATCCACTGCTGGAAGTTGCTATCTAGTAAAAGCAGGGACTT60.1431980906921241No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCATGGACTT60.1431980906921241No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGGCTT60.1431980906921241No Hit
AGCCTAGACATCCACTGCTGGGCTCGTGGTAATGATCCTTCCGCTGTCTC50.11933174224343676No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTACCTAGTAAAAGCAGGGACTT50.11933174224343676No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT50.11933174224343676No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGATACT50.11933174224343676No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAGGGACTT50.11933174224343676No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)