FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi685.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi685.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15733
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT1221877.65842496663065No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT1450.9216296955443971No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT1160.7373037564355177No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTCT1040.6610309540456365No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAGGCAAGGACTTT860.5466217504608148No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTGTAAATAAAAGCAAGGACTTT810.5148414161316976No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTGTAAATAAAAGCAAGGACTTT790.5021292824000508No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACCTT730.46399288120511034No Hit
AGCCTAGACATCCACTGCTGGAGTGGTAATGATCCTTCCGCTGTCTCTTA640.4067882794126994No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTAAATAAAAGCAAGGACTTT570.36229581135193545No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAGGGACTTT560.355939744486112No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTGTAAATAAAAGCAAGGACTTT550.3495836776202886No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTCGTAAATAAAAGCAAGGACTTT550.3495836776202886No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTC520.33051547702281825No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAGAGCAAGGACTTT520.33051547702281825No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT510.32415941015699484No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT510.32415941015699484No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAGAAGCAAGGACTTT510.32415941015699484No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAAAGCAGGGACTT500.31780334329117144No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAGATAAAAGCAAGGACTTT490.311447276425348No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGAATAAAAGCAAGGACTTT490.311447276425348No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTGTAAATAAAAGCAAGGACTTT470.29873514269370116No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAGTAAAAGCAAGGACTTT470.29873514269370116No Hit
AGCCTAGACATCCACTGCTAAAAGTTGTTGTAAATAAAAGCAAGGACTTT470.29873514269370116No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT460.2923790758278777No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGAACTTT440.2796669420962309No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCGAGGACTTT410.26059874149876056No Hit
AGCCTAGACATCCACTGCTGAAAGCTGTTGTAAATAAAAGCAAGGACTTT400.25424267463293715No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTGTAAATAAAAGCAAGGACTTT360.22881840716964344No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAATGACTTT350.22246234030381998No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGCAAATAAAAGCAAGGACTTT340.21610627343799657No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGGCTTT340.21610627343799657No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTAAATAAAAGCAAGGACTTTCGT330.20975020657217314No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC310.19703807284052627No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT310.19703807284052627No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATGAAAGCAAGGACTTT290.18432593910887943No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGTACTTT260.16525773851140912No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTAATAATAATCCAATTTACCCAG250.15890167164558572No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT230.14618953791393885No Hit
AGCCTAGACATTCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT220.13983347104811544No Hit
AGCCTAGACATCTACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT220.13983347104811544No Hit
AGCCTAGACATCCACTGCTGGATGTGGTAATGATCCTTCCGCTGTCTCTT210.133477404182292No Hit
AGCATAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT210.133477404182292No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAACAAAAGCAAGGACTTT210.133477404182292No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT200.12712133731646857No Hit
AGCCTAGACATCCACTGCTGTAAGTTGTTGTAAATAAAAGCAAGGACTTT200.12712133731646857No Hit
AGCCTAGACATCCACTGCTGAAAGTTTTGTAAATAAAAGCAAGGACTTTC190.12076527045064514No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAATAAAAGCAAGGACTTTC170.10805313671899829No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGTAAGGACTTT160.10169706985317485No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)