FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi683.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi683.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21229
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT841239.625041217202885No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTT514924.254557445004473No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT294413.867822318526542No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT1980.9326864195204673No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT1040.4898958971218616No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC1000.4710537472325593No Hit
AGCCTAGACATCCACTGCTGAAAGTCGTTATGGATTAAAACCAAAAACTT950.44750105987093125No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAGCAAGAACTT920.43336944745395445No Hit
AGCCTAGACATCCACTGCTGCCGAGTGGTAATGATCCTTCCGCTGTCTCT860.40510622262000096No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTCTCTTA720.33915869800744264No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT590.27792171086720996No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATGGATTAAAACCAAAAACTT590.27792171086720996No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTTAACGCAAAAACTTT520.2449479485609308No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACCTT500.23552687361627964No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAGCTTT480.22610579867162844No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGGAGTGAACGCAAAAACTTT470.22139526119930283No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAGGCAAGAACT460.21668472372697722No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGGACGCAAAAACTTT460.21668472372697722No Hit
AGCCTAGACATCCACTGCTGGAAGTTTGTGGAAGTGAACGCAAAAACTTT430.20255311131000048No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCGAAAACTTT400.1884214988930237No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAGGTGAACGCAAAAACTTT390.1837109614206981No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACTGTAGACTT390.1837109614206981No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACCT390.1837109614206981No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTT380.1790004239483725No Hit
AGCCTAGACATCCACTGCTGAAAGTTCGTGGAAGTGAACGCAAAAACTTT380.1790004239483725No Hit
AGACTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT360.16957934900372132No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCGAGAACT360.16957934900372132No Hit
AGCCTAGACATCCACTGCTGAAGGTTTGTGGAAGTGAACGCAAAAACTTT350.16486881153139574No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC330.15544773658674454No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT330.15544773658674454No Hit
AGCCTAGACATCCACTGCTGAAAGTCTGTGGAAGTGAACGCAAAAACTTT320.15073719911441893No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTATCTAGTTAAGAGTAAAAACTT310.14602666164209335No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAGCGCAAAAACTTT310.14602666164209335No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAGAGCAAGAACT300.14131612416976777No Hit
AGCCTAGACATCAACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT290.1366055866974422No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTAAACGCAAAAACTTT290.1366055866974422No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGCGAACGCAAAAACTTT280.13189504922511658No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTGGTTAAAAGCAAGAACT280.13189504922511658No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGTATTAAAACCAAAAACTT280.13189504922511658No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACAAAAAACTT270.127184511752791No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGGATTAAAACCAAAAACTT270.127184511752791No Hit
AGCCTAGACATCCACTGCTGAGAGTTTGTGGAAGTGAACGCAAAAACTTT260.1224739742804654No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTCT260.1224739742804654No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTC260.1224739742804654No Hit
AGCCTAGACATCCACTGCTGAAAGCTTGTGGAAGTGAACGCAAAAACTTT250.11776343680813982No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTT250.11776343680813982No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGCGGAAGTGAACGCAAAAACTTT240.11305289933581422No Hit
AGCCTAGACATCCACTGCTAAAAGTTTGTGGAAGTGAACGCAAAAACTTT240.11305289933581422No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC240.11305289933581422No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAGACTTT230.10834236186348861No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAGACCAAAAACTT230.10834236186348861No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATGGATTAAAACCAAAAACTT220.10363182439116303No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTC220.10363182439116303No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)