FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOChi677.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOChi677.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3126
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT65620.985284708893154No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT41213.179782469609725No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAGAGACT35411.324376199616124No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT2899.245041586692258No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT1534.894433781190019No Hit
AGCCTAGACATCCACTGCTGGAGATGTGGTAATGATCCTTCCGCTGTCTC922.943058221369162No Hit
AGCCTAGACATCCACTGCTGGTCTCGTGGTAATGATCCTTCCGCTGTCTC662.111324376199616No Hit
AGCCTAGACATCCACTGCTGATGTGGTAATGATCCTTCCGCTGTCTCTTA642.0473448496481126No Hit
AGCCTAGACATCCACTGCTGGGTCTCGTGGTAATGATCCTTCCGCTGTCT642.0473448496481126No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAAGACT521.6634676903390915No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC461.471529110684581No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAAAGCAAGGACTT411.3115802943058221No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT381.2156110044785668No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTAGAAGTGAACGCAAAAACTTT371.183621241202815No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT361.1516314779270633No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGGATTAAAACCAAGACTTT331.055662188099808No Hit
AGCCTAGACATCCACTGCTGTGGTAATGATCCTTCCGCTGTCTCTTATAC280.8957133717210494No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTCTAGTTAAAAGCAGAGACT180.5758157389635317No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTGGATTAAAACTGTAGACTT160.5118362124120281No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT120.3838771593090211No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGTACT100.3198976327575176No Hit
AGCCTAGACATCCACTGCTGTCGCGCACAGTGTGTATAGAGACAGTGGTA100.3198976327575176No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTTAAAAGCAAGGACT90.28790786948176583No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGAGACT90.28790786948176583No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAGAACCAAAGACTT80.2559181062060141No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTTAGGATTAAAACCAAAGACTT60.19193857965451055No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAGGACTT50.1599488163787588No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATCTAGTTAAAAGCAGAGACT50.1599488163787588No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT50.1599488163787588No Hit
AGCCTAGACATACACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT50.1599488163787588No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT50.1599488163787588No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAGAAGCAAGGACT50.1599488163787588No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTGAAAGCAAGGACT50.1599488163787588No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTTAAAAGCAAGGACT50.1599488163787588No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATTGATTAAAACCAAAGACTT40.12795905310300704No Hit
AGCCTAGACATCCACTGCTGTCGTCGGCAGGTCAGATGTGGTAATGATCC40.12795905310300704No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGTAGAGAC40.12795905310300704No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAGGGACT40.12795905310300704No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTGGTTAAAAGCAGAGACT40.12795905310300704No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCGAGGACT40.12795905310300704No Hit
AGACTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT40.12795905310300704No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)