FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOATH660.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOATH660.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4683
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT176537.6895152679906No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT155333.16250266922913No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC1793.8223361093316246No Hit
AGCCTAGACATCCACTGCTGTCTCGTGGTAATGATCCTTCCGCTGTCTCT1082.3062139654067906No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC811.729660474055093No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGGACT741.580183642963912No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTGTAAATAAAAGCAAGGACTTT370.790091821481956No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAATTAAAAGCAAGAATT290.6192611573777493No Hit
AGCCTAGACATACACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT200.42707666026051677No Hit
AGCCTAGACATCCACTGCTGAGAGTTGCTATTTAATTAAAAGCAAGAATT190.4057228272474909No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATC160.3416613282084134No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGGCTT150.3203074951953876No Hit
AGCCTAGACATACACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT130.2775998291693359No Hit
CGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT100.21353833013025839No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT100.21353833013025839No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGTACTT100.21353833013025839No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTC90.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAGAAGCAAGAATT90.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAGGGACTT90.19218449711723257No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT90.19218449711723257No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATCTAGTAAGAGCAAGGACTT80.1708306641042067No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAGGCAAGAATT80.1708306641042067No Hit
AGCCTAGACATCCACTGCTGCCGACGGTGGTAATGATCCTTCCGCTGTCT80.1708306641042067No Hit
AGCCTAGACATCCACTGCTGAAAGTCGCTATTTAATTAAAAGCAAGAATT80.1708306641042067No Hit
AGCCTAGACATCCACTGCTTAAAGTTGCTATTTAATTAAAAGCAAGAATT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATCTAGTAAGAGCAAGGACTT70.14947683109118087No Hit
AGCCTATACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAGTTAAAAGCAAGAATT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTACCTAGTAAGAGCAAGGACTT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAACTAAAAGCAAGAATT70.14947683109118087No Hit
AGCCTAGAAATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGGGCAAGGACTT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGATCAAGGACTT70.14947683109118087No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTAAGAGCAAGGACTT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAGAGCAAGAATT60.12812299807815503No Hit
AGCATAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAGGTTGCTATTTAATTAAAAGCAAGAATT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCCATTTAATTAAAAGCAAGAATT60.12812299807815503No Hit
AGCCTAGACATCAACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATCTAGTAAGAGCAAGGACTT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAACT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACCT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAATGACTT60.12812299807815503No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTGAAAGCAAGAATT50.10676916506512919No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGAACTT50.10676916506512919No Hit
AGCCTATACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT50.10676916506512919No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAATAGCAAGAATT50.10676916506512919No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGTAAGAGCAAGGACTT50.10676916506512919No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTGTTTAATTAAAAGCAAGAATT50.10676916506512919No Hit
AGACTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT50.10676916506512919No Hit
AGCCTAGATATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT50.10676916506512919No Hit
AGTCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT50.10676916506512919No Hit
AGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAGGAATT50.10676916506512919No Hit
CGCCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATT50.10676916506512919No Hit
AGCTAGACATCCACTGCTGAAAGTTGCTATTTAATTAAAAGCAAGAATTT50.10676916506512919No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)