FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_ITS-OOATH588.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_ITS-OOATH588.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT7543.859649122807014No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCAAGGACTT2615.204678362573098No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC127.017543859649122No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAATT95.263157894736842No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAAACTT52.923976608187134No Hit
AGCCTAGACATCCACTGCTGCCGACGAGTGGTAATGATCCTTCCGCTGTC31.7543859649122806No Hit
AGCCTAGACATCCACTGCTGGAAGTTGTTATTGATTAAAACCAAAGACTT21.1695906432748537No Hit
AAGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAAT21.1695906432748537No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTAAAAGT21.1695906432748537No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGGAAGTGAACGCAAAAACTTT21.1695906432748537No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTAAGAGCGAGGACTT21.1695906432748537No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAACCCAAAGACTT10.5847953216374269No Hit
AGCCTAGACATCCACTGTTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC10.5847953216374269No Hit
ACTCCGTGTAAACCGCCCGACACCGCGTAGGAGTCCGAGTCGAACTTGCC10.5847953216374269No Hit
AGCCTAGACATCCACTGCTTAAAGTTGTTATCTAGAATAAAAGCAGAGAC10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATTGATTAGAACCAAAGACTT10.5847953216374269No Hit
ACCCCGTGCAGACCTCCGGAGACCGCGTAGCCGCCGCCGCCGAACTTGCC10.5847953216374269No Hit
AGCCTAGACACCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTTT10.5847953216374269No Hit
ACACCATGAAGGCCACCAGACACCTTGTAGGCATTGTCGTCCGATGTGTT10.5847953216374269No Hit
ACACCATGAAGGCCTCCGGACACCTTGTAGCCGCCGCCGCCGAACTTGCC10.5847953216374269No Hit
AGCCTAGGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACT10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAGAGTTGTTATCTAGTAAGAGCAAGGACTT10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATGGATTAAAACCAAAAACTT10.5847953216374269No Hit
ACTCCGTGAAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCAAGTAAGAGCAAGGACTT10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGCCGGTGGTAATGATCCTTCCGCTGTCTCTT10.5847953216374269No Hit
ACGCCGTGGAGGCCGCCTGAGACCTTGTAGCTGTTCTGATTGAACTTGCC10.5847953216374269No Hit
AATATAGTTTCTTCTTGTGTTGAGTGCTTCCTATGATAAATAACTTCCTT10.5847953216374269No Hit
AGCCTAGTCATCCACTGCTAAAAGTTGTTATTGATTAAAACCAAAGACTT10.5847953216374269No Hit
AGCCTAGACATCAACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAACT10.5847953216374269No Hit
AGCCTAGACATTCACTGCTGAAAGTTGTTATCTAGTTAAAAGCAAGAATT10.5847953216374269No Hit
ACACCATGGAGACCACCTGACACCGCGTAGGAGTCCTAGTCGAACTTGCC10.5847953216374269No Hit
AGCCCAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT10.5847953216374269No Hit
ACACCATGCAGTCCGCCGGAGGTCTCATAGGCCTTGCCCGAGAATTTGCC10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAAAGTTTGTGTCTATGAAAACAAAAAATTT10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAAGGTTGTTATTGATTAAAACCAAAGACTT10.5847953216374269No Hit
AGTCTAGACATCCACTGCTGAAAGTTGTTATTGATTAAAACCAAAGACTT10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGACAGTTGTTATTGATTAAAACCAAAGACTT10.5847953216374269No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGTTTAAAGCAAGAACT10.5847953216374269No Hit
ACTCCGTGCAGGCCACCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC10.5847953216374269No Hit
ACGCCGTGTAGTCCACCGGAGACCTTGTAGGAGTTCTGGTCGAACTTACC10.5847953216374269No Hit
ACACCGTGAAGGCCTCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC10.5847953216374269No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)