FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBDve860.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBDve860.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5241
Sequences flagged as poor quality0
Sequence length301
%GC63

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGTAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC110.20988360999809197No Hit
ACGCCGTGGAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC110.20988360999809197No Hit
ACACCGTGGAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC110.20988360999809197No Hit
ACGCCGTGCAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC100.19080328181644723No Hit
ACTCCGTGTAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC90.17172295363480253No Hit
ACTCCATGGAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC90.17172295363480253No Hit
ACGCCATGCAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC90.17172295363480253No Hit
ACTCCGTGGAGGCCGCCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC90.17172295363480253No Hit
ACGCCGTGGAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC90.17172295363480253No Hit
ACGCCATGAAGGCCGCCTGAGACCTTGTACGAGTTCTGGTCGAACTTGCC80.1526426254531578No Hit
ACGCCGTGGAGGCCGCCTGAGACCTTGTACGAGTTCTGGTCGAACTTGCC80.1526426254531578No Hit
ACGCCATGGAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC70.1335622972715131No Hit
ACGCCGTGTAGGCCGCCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACGCCGTGAAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC70.1335622972715131No Hit
ACGCCGTGGAGGCCACCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACGCCATGTAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC70.1335622972715131No Hit
ACGCCGTGGAGGCCGCCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACGCCGTGTAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACGCCGTGGAGGCCACCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACGCCGTGGAAGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACCCCGTGGAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC70.1335622972715131No Hit
ACGCCGTGCAAGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC60.11448196908986834No Hit
ACGCCATGTAGGCCGCCTGAGACCTTGTACGAGTTCTGGTCGAACTTGCC60.11448196908986834No Hit
ACGCCATGAAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC60.11448196908986834No Hit
ACGCCGTGAAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC60.11448196908986834No Hit
ACGCCATGGAGGCCTCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC60.11448196908986834No Hit
ACGCCGTGGAAGCCGCCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC60.11448196908986834No Hit
ACTCCGTGGAGGCCGCCGGCGTGCAGTTCGGTCATGACGATCTCGGCGGC60.11448196908986834No Hit
ACGCCATGGAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC60.11448196908986834No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)