FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBDve278.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBDve278.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3349
Sequences flagged as poor quality0
Sequence length301
%GC63

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGTAGGCCGCCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC50.1492982979994028No Hit
ACGCCGTGGAGGCCGCCGGAGACCTTGTACGAGTTCTGGTCGAACTTGCC50.1492982979994028No Hit
ACACCGTGTAGGCCGCCGGACGCCGCGTAGGAGCCGCTGCCGAACTTGCC50.1492982979994028No Hit
ACGCCGTGCAGGCCGCCCGAGACCTTGTACGAGTTCTGGTCGAACTTGCC40.11943863839952225No Hit
ACGCCGTGGAGGCCGCCGGACACCTTGTAGGAGTTCTGGTCGAACTTACC40.11943863839952225No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)