FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi188.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi188.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9692
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC240.24762690879075525No Hit
ACTCCGTGTAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC220.2269913330581923No Hit
ACGCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC210.21667354519191084No Hit
ACGCCGTGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC190.1960379694593479No Hit
ACGCCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC190.1960379694593479No Hit
ACTCCGTGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC180.18572018159306647No Hit
ACACCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC180.18572018159306647No Hit
ACTCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC170.17540239372678498No Hit
ACACCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC170.17540239372678498No Hit
ACGCCGTGTAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC170.17540239372678498No Hit
ACGCCGTGGAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC170.17540239372678498No Hit
ACTCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC160.16508460586050352No Hit
ACGCCGTGGAGTCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC160.16508460586050352No Hit
ACGCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC160.16508460586050352No Hit
ACGCCATGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC150.15476681799422204No Hit
ACTCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.14444903012794055No Hit
ACGCCGTGGAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.14444903012794055No Hit
ACGCCGTGAAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.1341312422616591No Hit
ACTCCATGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.1341312422616591No Hit
ACTCCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.1341312422616591No Hit
ACGCCATGTAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCATGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCATGGAGGCCTCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCATGAAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCATGTAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCATGAAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCGTGGAGGCCACCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.12381345439537762No Hit
ACGCCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACACCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACTCCGTGGAGGCCACCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACTCCGTGGAGGCCTCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACACCGTGGAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACGCCGTGGAGTCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACGCCATGAAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACACCGTGAAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACGCCATGGAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACGCCATGGAAGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACCCCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.11349566652909615No Hit
ACGCCGTGCAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACGCCGTGCAGGCCGCCCGACACGGCGTAGGCGCCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACGCCGTGCAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACCCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACCCCATGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACGCCGTGGAGGCCGCCAGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACCCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACCCCATGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACGCCGTGGAGGCCTCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACTCCGTGAAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACTCCATGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACTCCGTGTAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACACCATGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit
ACACCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.10317787866281469No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)