FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi187.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi187.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10570
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC310.293282876064333No Hit
ACTCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC270.2554399243140965No Hit
ACGCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC230.21759697256385999No Hit
ACGCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC220.20813623462630085No Hit
ACTCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC210.1986754966887417No Hit
ACCCCGTGTAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC190.17975402081362346No Hit
ACACCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC190.17975402081362346No Hit
ACGCCATGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC190.17975402081362346No Hit
ACTCCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC190.17975402081362346No Hit
ACGCCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC170.1608325449385052No Hit
ACTCCGTGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC160.15137180700094607No Hit
ACCCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC160.15137180700094607No Hit
ACGCCGTGGAGGCCTCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC160.15137180700094607No Hit
ACACCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC150.14191106906338694No Hit
ACGCCGTGTAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC150.14191106906338694No Hit
ACTCCGTGGAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC150.14191106906338694No Hit
ACCCCATGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.13245033112582782No Hit
ACGCCGTGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.13245033112582782No Hit
ACGCCGTGAAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.13245033112582782No Hit
ACGCCGTGGAGTCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.13245033112582782No Hit
ACGCCATGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.13245033112582782No Hit
ACTCCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.12298959318826869No Hit
ACGCCATGAAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.12298959318826869No Hit
ACGCCGTGGAGGCCACCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.12298959318826869No Hit
ACGCCATGCAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.12298959318826869No Hit
ACGCCGTGAAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.12298959318826869No Hit
ACACCGTGTAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.12298959318826869No Hit
ACGCCGTGAAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACTCCATGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACGCCGTGGAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACGCCATGTAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACACCGTGTAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACGCCGTGGAGGCCTCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACACCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACTCCATGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACGCCGTGGAAGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACGCCGTGGAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACACCGTGAAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACACCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.11352885525070955No Hit
ACGCCATGGAGTCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCGTGGAGACCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCGTGCAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACACCGTGGAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACACCGTGAAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACACCATGTAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCGTGGAGTCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCGTGTAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACTCCGTGCAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCGTGGAGACCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACCCCGTGGAAGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACCCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACTCCGTGTAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCGTGCAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit
ACGCCATGGAAGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.10406811731315042No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)