FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi165.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi165.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1225
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACCATGGAGTCCACCGGAGGTGCTGTAGACTTCGGAATCGAACTTTCC20.163265306122449No Hit
ACCCCATGTAGGCCGCCTGACACCTTGTAGGCATTGTCGTCGGACGTATT20.163265306122449No Hit
ACCCGTGAAAGCCACCTGATACCTTGTACGCGTTGTCTTCGGACGTATTC20.163265306122449No Hit
ACTCCGTGGAAGCCACCTGAGACCTTGTAGGCGTTGTCGTCGCTGGTGTT20.163265306122449No Hit
ACTCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.163265306122449No Hit
ACTCCGTGCAGGCCACCCGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT20.163265306122449No Hit
ACTCCATGAAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.163265306122449No Hit
ACGCCATGGAGGCCACCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.163265306122449No Hit
ACACCGTGAAAGCCGCCTGAGACCTTGTAGCTGTTGTCGTCGAACTTACC20.163265306122449No Hit
ACTCCGTGAAGTCCGCCTGAGACCGCGTAGGCCTTGCCGTCGAACTTGCC20.163265306122449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)