FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi149.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi149.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8922
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC120.13449899125756556No Hit
ACGCCGTGGAGGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC120.13449899125756556No Hit
ACGCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC110.12329074198610178No Hit
ACTCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.11208249271463797No Hit
ACTCCGTGGAGGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC100.11208249271463797No Hit
ACGCCATGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC100.11208249271463797No Hit
ACGCCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC90.10087424344317418No Hit
ACTCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC90.10087424344317418No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)