FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1694
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.1770956316410862No Hit
ACTCCGTGCAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
ACACCGTGTAGGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACACCGTGCAGACCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACGCCATGGAGGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCATGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
ACCCCGTGGAGGCCGCCCGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACTCCATGGAGGCCTCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCATGGAGGCCGCCTGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACCCCGTGGAATCCGCCTGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACTCCGTGAAGACCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCGTGAAAGCCGCCGGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACGCCATGAAGGCCTCCCGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACGCCATGGAGGCCGCCTGACACCTTGTAGGCGTTGTCGTCGTTGGTGTT20.11806375442739078No Hit
ACGCCGTGTAGGCCGCCGGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACTCCATGTAATCCGCCAGAGACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACGCCATGGAAGCCTCCGGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACACCGTGTAAGCCTCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACCCCGTGGAAGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACTCCGTGGAGACCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
ACACCGTGTAGTCCGCCTGAGACCTTGTAGGAGTTCTGGTCGAACTTCCC20.11806375442739078No Hit
ACTCCGTGTAGGCCACCGGAGACCTTGTAGCCGCCGCCGAACTTGCCGCC20.11806375442739078No Hit
ACGCCGTGGAGGCCTCCGGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACTCCATGTAATCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACTCCGTGGAAGCCGCCGGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACTCCGTGGAGTCCACCGGAGACCTTGTAGGAATTCTGGTCGAACTTACC20.11806375442739078No Hit
ACGCCGTGTAGACCTCCTGACGCGGCATAGGATCCGCTGCCGAACTTGCC20.11806375442739078No Hit
ACGCCGTGCAGGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCGTGGAGGCCGCCCGAGACCTTGTAGGAATTCTGGTCGAACTTACC20.11806375442739078No Hit
ACGCCGTGGAGACCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
CCACCGTGGAGGCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCGTGTAGGCCGCCCGCGTGCAGCTCGGTCAGCGCGATCTCCGCGGC20.11806375442739078No Hit
ACTCCATGCAGTCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCGTGGAGTCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
ACTCCGTGAAGTCCGCCGGAGACCTTGTAGCCGCCTCCGCCGAACTTTCC20.11806375442739078No Hit
ACGCCGTGGAGTCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACGCCATGTAGCCCGCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACCCCGTGAAGGCCGCCGGACACCTTGTAGCCGCCGCCACCGAACTTGCC20.11806375442739078No Hit
ACACCGTGTAGGCCGCCGGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT20.11806375442739078No Hit
ACACCGTGTAGGCCGCCGGACACCTTGTAGCCGCCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACCCCATGCAAACCGCCCGATATACATCCCTGGCCTCTGTCTCTTATACA20.11806375442739078No Hit
ACGCCGTGAAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
ACGCCGTGAAGGCCACCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC20.11806375442739078No Hit
ACGCCGTGTAGGCCTCCCGACACCTTGTACGCATTGTCGTCCGACGTGTT20.11806375442739078No Hit
ACCCCGTGAAGGCCGCCGGAGACCTTGTAGGAATTCTTGTCGAACTTACC20.11806375442739078No Hit
ACCCCATGGAGGCCGCCAGAGACCGCGTACCCGCCGCCGCCGAACTTTCC20.11806375442739078No Hit
ACACCGTGTAGACCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC20.11806375442739078No Hit
ACGCCGTGGAGTCCTCCCGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT20.11806375442739078No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)