FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi134.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi134.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3698
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGAAGGCCACCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.1352082206598161No Hit
ACGCCGTGGAGACCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACTCCGTGGAGGCCGCCTGAGACCTTGTACGCGTTCTCGTCGTTGGTGTT40.1081665765278529No Hit
ACTCCGTGGAGGCCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACGCCGTGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACGCCGTGGAGACCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACGCCATGGAGGCCACCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACGCCATGGAGGCCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACTCCGTGTAGGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACTCCGTGGAGACCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACTCCGTGAAGGCCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACGCCGTGCAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACTCCGTGCAAGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.1081665765278529No Hit
ACGCCGTGGAGGCCGCCTGACACCTTGTACGCATTGTCGTCCGACGTGTT40.1081665765278529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)