FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi120.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi120.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5346
Sequences flagged as poor quality0
Sequence length301
%GC65

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.2618780396558174No Hit
ACGCCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.24317246539468765No Hit
ACTCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC90.16835016835016833No Hit
ACGCCGTGGAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC90.16835016835016833No Hit
ACGCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC90.16835016835016833No Hit
ACCCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC80.14964459408903852No Hit
ACGCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC80.14964459408903852No Hit
ACGCCGTGAAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC70.1309390198279087No Hit
ACTCCATGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC70.1309390198279087No Hit
ACGCCGTGCAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC70.1309390198279087No Hit
ACGCCGTGGAGACCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACGCCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACTCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACTCCGTGGAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACTCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACGCCGTGGAGGCCACCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACTCCGTGGAGACCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACCCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACGCCGTGGAGGCCTCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACACCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACGCCATGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit
ACACCATGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC60.11223344556677892No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)