FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi117.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi117.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2791
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCCATGGAGGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.17914725904693657No Hit
ACCCCGTGCAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.17914725904693657No Hit
ACTCCATGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.17914725904693657No Hit
ACTCCGTGGAAGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC50.17914725904693657No Hit
ACGCCGTGTAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.14331780723754925No Hit
ACTCCGTGGAGGCCTCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.14331780723754925No Hit
ACTCCATGTAGGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.14331780723754925No Hit
ACTCCGTGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC40.14331780723754925No Hit
ACGCCGTGTAGTCCACCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACGCCGTGGAGACCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACGCCGTGGAGACCTCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGAAGTCCGCCAGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGGAAGCCACCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGTAGACCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGCAAGCCACCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGGAGACCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACGCCATGGAGACCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACGCCATGCAAGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGGAGGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGGAAGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGGAAGCCGCCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGTAAGCCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACGCCGTGCAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCATGTAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCATGTAGACCACCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACACCGTGGAGACCGCCAGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACTCCGTGTAGGCCACCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit
ACACCGTGCAGACCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC30.10748835542816196No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)