FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBChi114.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBChi114.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6623
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGCAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC80.12079118224369621No Hit
ACTCCGTGAAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC80.12079118224369621No Hit
ACGCCGTGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC70.10569228446323418No Hit
ACTCCGTGGAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC70.10569228446323418No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)