FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBATH93.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBATH93.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3657
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC70.1914137270987148No Hit
ACACCGTGGAGGCCGCCCGACACCGCGTAGGAGTCCGAGTCGAACTTGCC70.1914137270987148No Hit
ACTCCGTGCAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC70.1914137270987148No Hit
ACCCCGTGGAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC60.16406890894175555No Hit
ACGCCATGGAGTCCGCCCGACACCGCGTAGGAGTCCGAGTCGAACTTGCC50.13672409078479628No Hit
ACGCCGTGCAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC50.13672409078479628No Hit
ACGCCGTGAAGGCCGCCCGAGGACGCGTAGGCCTTGCTGCTGAACTTGCC50.13672409078479628No Hit
ACGCCGTGGAAGCCGCCGGAGGACGCGTAGGCCTTGCTGCTGAACTTGCC50.13672409078479628No Hit
ACTCCATGGAGGCCGCCGGAGACCTTGTAGGAGTTCTGGTCGAACTTACC50.13672409078479628No Hit
ACACCGTGGAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACCCCGTGAAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACACCGTGGAGGCCGCCGGAGACCTTGTAGGAGTTCTGGTCGAACTTACC40.10937927262783702No Hit
ACGCCATGGAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACACCGTGTAGGCCGCCAGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACGCCGTGGAAGCCGCCGGAGACCTTGTAGGAGTTCTGGTCGAACTTACC40.10937927262783702No Hit
ACCCCGTGGAGGCCGCCCGAGGACGCGTAGGCCTTGCTGCTGAACTTGCC40.10937927262783702No Hit
ACGCCATGGAGGCCGCCGGAGACCTTGTAGGAGTTCTGGTCGAACTTACC40.10937927262783702No Hit
ACACCGTGCAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACTCCGTGGAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACGCCATGGAGTCCGCCCGAGGACGCGTAGGCCTTGCTGCTGAACTTGCC40.10937927262783702No Hit
ACACCGTGTAGGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACGCCGTGTAGGCCGCCCGAGACCTTGTAGGAGTTCTGGTCGAACTTACC40.10937927262783702No Hit
ACGCCGTGGAAGCCGCCGGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit
ACTCCATGTAGGCCGCCTGAGGACGCGTAGGCCTTGCTGCTGAACTTGCC40.10937927262783702No Hit
ACGCCGTGGAGGCCGCCCGACACCGCGTAGGAGTCCGAGTCGAACTTGCC40.10937927262783702No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)