FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBATH45.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBATH45.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7850
Sequences flagged as poor quality0
Sequence length301
%GC63

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC180.22929936305732482No Hit
ACGCCGTGGAGGCCGCCCGACACCTTGTACGTGTCGCTGTTGAATTTGCC130.16560509554140126No Hit
ACGCCATGGAGGCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC100.12738853503184713No Hit
ACGCCGTGCAGGCCGCCCGACACCTTGTACGTGTCGCTGTTGAATTTGCC90.11464968152866241No Hit
ACGCCATGGAGGCCGCCTGACACCTTGTACGTGTCGCTGTTGAATTTGCC90.11464968152866241No Hit
ACTCCATGGAGGCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC90.11464968152866241No Hit
ACGCCGTGAAGGCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC90.11464968152866241No Hit
ACTCCGTGTAGGCCGCCTGACACCTTGTACGTGTCGCTGTTGAATTTGCC80.1019108280254777No Hit
ACGCCATGGAGACCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC80.1019108280254777No Hit
ACGCCGTGGAGTCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC80.1019108280254777No Hit
ACCCCGTGGAGGCCGCCCGACACCTTGTACGTGTCGCTGTTGAATTTGCC80.1019108280254777No Hit
ACGCCATGCAGGCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC80.1019108280254777No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)