FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBATH37.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBATH37.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43
Sequences flagged as poor quality0
Sequence length301
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCTGCGTTCTTCATCGATGCCAGAGCCAAGAGATCCATTGTTGAAAGT24.651162790697675No Hit
CGGCTGCGTTCTTCATCGATGCGAGAGCCAAGAGATCCGTTGTTGAAAGT24.651162790697675No Hit
ACGCCATGGAGGCCGCCGGACACCTTGTAGCCGCCGCCGTCGCCGAACTT12.3255813953488373No Hit
ACGCCGTGTAGACCGCCGGACACCTTGTAGCCACCCCCGCCGAACTTGCC12.3255813953488373No Hit
ACCCCGTGTAAACCACCCGAGACCTTGTACGAGTTCTCGTCGTTCTTACT12.3255813953488373No Hit
AGCCTAGACATCCACTGCTGAAAGTTGTTATCTAGAATAAAAGCAGAGAC12.3255813953488373No Hit
ACTCCATGTAGTCCGCCGGACACCTTGTACGTGTCGCTGTTGAATTTGCC12.3255813953488373No Hit
ACTCCGTGTAGGCCGCCGGATACCTTATAGGCATTGTCGTCGCTGGAATT12.3255813953488373No Hit
CGGCTGCGTTCTTCATCGATGCCCGAACCAAGAGATCCGTTGTTGAAAGT12.3255813953488373No Hit
ACACCGTGCAAGCCGCCTGACACCTTGTACGCATTGTCGTCCGAAGTGTT12.3255813953488373No Hit
ACACCGTGTAATCCGCCGGACACGGAGTATCCGCCGCCGCCGAACTTTCC12.3255813953488373No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTAAAAGT12.3255813953488373No Hit
ACACCGTGAAGTCCGCCCGACACCGCGTACGAGTCGGAGTCGAACTTGCC12.3255813953488373No Hit
ACCCCGTGAAGGCCGCCTGACACCTTGTAGCTGTTCTGGTTGAACTTGCC12.3255813953488373No Hit
CGTCTGCGTTCTTCATCTTTGCGATTTCCTACAGATCCGTTGTTTATAGT12.3255813953488373No Hit
CGGCTGCGTTCTTCATCGATGCGCAAGCCAAGAGATCCGTTGTTGAAAGT12.3255813953488373No Hit
ACTCCGTGGAGACCGCCGGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC12.3255813953488373No Hit
ACGCCATGTAAGCCGCCCGATACTTTGTACGTGTCGCTGTTGAACTTGCC12.3255813953488373No Hit
ACACCGTGGAGCCCGCCCGAGACCTTGTAGGAGCTCTGGTCGAACTTACC12.3255813953488373No Hit
AGCCTGGACATCCACTGCTGAAAGTTGTTATCTAGTATGACCAAGGAGAC12.3255813953488373No Hit
ACCCCGTGTAGGCCACCTGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC12.3255813953488373No Hit
ACGCCGTGAAAGCCGCCCGATACTTTGTACGTGTCGCTGTTGAACTTGCC12.3255813953488373No Hit
ACCCCGTGCAAGCCTCCGGACACCTTGTACGCGTTGTCGTCCGACGTGCT12.3255813953488373No Hit
ACTCCGTGAAGTCCACCTGAGACGCCGTAGCTCTTGCCGTCGAACTTGCC12.3255813953488373No Hit
ACGCCGTGAAGGCCTCCGGAGACCTTGTAGCTGTCGTTGTCGAACTTGCC12.3255813953488373No Hit
CGGCTGCGTTCTTCATCGATGCGAGAACCAAGAGATCCGTTGTTAAAAGT12.3255813953488373No Hit
ACGCCGTGGAGACCGCCCGATACTTTGTACGTGTCGCTGTTGAACTTGCC12.3255813953488373No Hit
ACTCCGTGGAGACCTCCTGAGACCTTGTAGCCACCGCCACCGAACTTGCC12.3255813953488373No Hit
ACACCGTGGAGGCCGCCTGAGACCTTATAGGCATTGTCGTCGGACGTATT12.3255813953488373No Hit
CCACCGTGTAGGCCGCCCGAGACCTTGTAGCTGTTCTGGTTGAACTTGCC12.3255813953488373No Hit
ACACCGTGGAGACCACCTGACACCTTGTAGGCGTTGTCGTCGGACGTGTT12.3255813953488373No Hit
ACGCCGTGAAGGCCACCGGAGACCTTGTAGGAGTTCTGGTCGAACTTCCC12.3255813953488373No Hit
ACGCCGTGTAGACCACCTGAGGTTTCGTAAGCCTTGGAATCGAATTTGCC12.3255813953488373No Hit
ACTCCTGTAGGCCTCCCGAGACGGCGTAACCACCGCCGCCGAACTTCCCA12.3255813953488373No Hit
ACACCATGAAGGCCGCCGGACACCTTGTAGCTGTTCTGGTTGAACTTGCC12.3255813953488373No Hit
ACGCCGTGTAGGCCACCCGAGACCTTGTAGGAGTTCTGGTCGAACTTACC12.3255813953488373No Hit
ACACCATGTAGGCCTCCCGAGACCTTGTAGCTGTTTTGGTTGAACTTGCC12.3255813953488373No Hit
ACACCATGCAGTCCGCCTGAGACCTTGTACGCGTTTTCGTCGTTGGTGTT12.3255813953488373No Hit
ACGCCGTGAAATCCGCCCGAGACCGCGTAGCCGCCGCCGCCGAACTTGCC12.3255813953488373No Hit
ACGCCGTGTAAGCCGCCCGAGACCTTGTAGCTGTTCTGGTCGAACTTGCC12.3255813953488373No Hit
ACTCCGTGAAGGCCGCCCGAGACCTTGTAGGAGTTCTGGTCGAACTTCCC12.3255813953488373No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)