FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBATH16.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBATH16.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11464
Sequences flagged as poor quality0
Sequence length301
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC220.19190509420795532No Hit
ACGCCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC200.17445917655268667No Hit
ACGCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC180.15701325889741802No Hit
ACGCCATGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.12212142358688066No Hit
ACCCCGTGGAGGCCGCCTGATGCCGCGTACGAACCGCCGCCGAACTTGCC140.12212142358688066No Hit
ACACCGTGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC130.11339846475924634No Hit
ACCCCGTGGAGGCCGCCCGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.10467550593161201No Hit
ACACCATGGAGGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.10467550593161201No Hit
ACGCCGTGGAAGCCGCCGGATGCCGCGTACGAACCGCCGCCGAACTTGCC120.10467550593161201No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)