FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n02_GyrBATH10.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n02_GyrBATH10.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6847
Sequences flagged as poor quality0
Sequence length301
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCCGTGGAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC200.2920987293705272No Hit
ACGCCGTGTAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC190.2774937929020009No Hit
ACGCCATGGAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC160.23367898349642177No Hit
ACACCGTGGAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC100.1460493646852636No Hit
ACGCCGTGGAGGCCGCCTGACACCTTGTACGAGTTGTCGTCGAACTTACC90.13144442821673724No Hit
ACACCGTGGAAGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC80.11683949174821089No Hit
ACGCCGTGGAAGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC80.11683949174821089No Hit
ACTCCGTGGAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC80.11683949174821089No Hit
ACGCCGTGCAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC70.10223455527968454No Hit
ACACCGTGTAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC70.10223455527968454No Hit
ACGCCGTGGAGGCCGCCCGACACCTTGTACGAGTTGTCGTCGAACTTACC70.10223455527968454No Hit
ACGCCGTGGAGGCCGCCGGATACCTTATAAGAATTGTCGTCGAACTTACC70.10223455527968454No Hit
ACGCCATGTAGGCCGCCGGACACCTTGTACGAGTTGTCGTCGAACTTACC70.10223455527968454No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)