FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSDve916.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSDve916.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3624
Sequences flagged as poor quality0
Sequence length301
%GC45

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG231263.796909492273734No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG3619.961368653421633No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG1423.9183222958057393No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC1052.8973509933774833No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG391.076158940397351No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG210.5794701986754967No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG210.5794701986754967No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG210.5794701986754967No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGACCGCAGCCGC190.5242825607064018No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG170.4690949227373068No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG150.4139072847682119No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG150.4139072847682119No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG150.4139072847682119No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA150.4139072847682119No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG140.3863134657836645No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG130.358719646799117No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT110.30353200883002207No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG110.30353200883002207No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTTTCCGTAGGTG100.27593818984547464No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGAACGCAGCCGC100.27593818984547464No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG100.27593818984547464No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG90.24834437086092717No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG90.24834437086092717No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG90.24834437086092717No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG90.24834437086092717No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG90.24834437086092717No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG80.22075055187637968No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAATAAGGTTTCCGTAGGTG70.19315673289183224No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGAAGAACGCAGC70.19315673289183224No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG60.16556291390728478No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG60.16556291390728478No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGCTTCCGTAGGTG60.16556291390728478No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTTTCCGTAGGTG60.16556291390728478No Hit
ACGCCCAAGCAGATTTACAACGACCCGGCCAATCTGTTTGTGGCCAGCTT50.13796909492273732No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG50.13796909492273732No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCTGTAGGTG50.13796909492273732No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG50.13796909492273732No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAGCAAGGTTTCCGTAGGTG50.13796909492273732No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.11037527593818984No Hit
GGTTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.11037527593818984No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG40.11037527593818984No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTTACAAGGTTTCCGTAGGTG40.11037527593818984No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGTCGTAACAAGGTTTCCGTAGGTGA40.11037527593818984No Hit
GACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG40.11037527593818984No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG40.11037527593818984No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTACCGTAGGTG40.11037527593818984No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGACCGCAGCCGC40.11037527593818984No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG40.11037527593818984No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)