FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSDve545.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSDve545.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21203
Sequences flagged as poor quality0
Sequence length301
%GC54

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG1628276.79102013865963No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG11495.419044474838467No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG4952.3345752959486865No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA1130.5329434513983871No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG980.462198745460548No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTAGGTG950.44804980427298025No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG830.3914540395227091No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTAGGTG770.36315615714757343No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGCG710.33485827477243785No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTAGGTG710.33485827477243785No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTG710.33485827477243785No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTAGGTG700.3301419610432486No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTT690.3254256473140593No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTCTCCGTAGGTG670.31599301985568085No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG630.29712776493892373No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG620.2924114512097345No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTAGGTG590.2782625100221667No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTATGTG570.26882988256378815No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTCTCCGTAGGTG550.2593972551054096No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTCTCCGTAGGTG540.2546809413762203No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTCTCCGTAGGTG530.2499646276470311No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCAGTAGGTG480.22638305900108477No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTCTCCGTAGGTG430.20280149035513842No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTCTCCGTAGGTG420.19808517662594916No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTACGTAGGTG410.1933688628967599No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG410.1933688628967599No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG400.18865254916757063No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG400.18865254916757063No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGCAGGTG390.18393623543838136No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTGGGTG360.16978729425081357No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTATCCGTAGGTG320.1509220393340565No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG310.14620572560486725No Hit
GGCTTGGTCATTTAGAGTAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG290.1367730981464887No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG280.13205678441729946No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTA280.13205678441729946No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTCTCCGTAGGTG260.1226241569589209No Hit
GGCTTGGCCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG260.1226241569589209No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCTGTAGGTG240.11319152950054238No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGTCGTAACAAGGTCTCCGTAGGTGA220.10375890204216383No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)