FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSDve492.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSDve492.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Sequences flagged as poor quality0
Sequence length301
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG5375.71428571428571No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG22.857142857142857No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG22.857142857142857No Hit
CGGAAGGATCATTACCACACCTAAAACCTTTCCACGTGAACCGTATCAAT11.4285714285714286No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG11.4285714285714286No Hit
AGACCGGCCATGTATATTGGGGGCACCGACGAGAAGGCCATGCACCACCT11.4285714285714286No Hit
AGGCCTGGGATGTATATTGGCGGCACCGACGAGAAGGCCATGCACCACCT11.4285714285714286No Hit
CGCCCGGCCATGTACATAGGCGACACCGATGACGGCTCGGGGCTCCACCA11.4285714285714286No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTA11.4285714285714286No Hit
CGTCCGGGCATGTATATCGGCGATACCGACGACGGATCGGGCCTCCACCA11.4285714285714286No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG11.4285714285714286No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT11.4285714285714286No Hit
AGCCCCGGAATGTATATCGGCGACACCGACGACGGGTCGGGCCTGCATTA11.4285714285714286No Hit
AGACCGGGGATGTATATTGGCGATACAGACGACGGTAGCGGTCTGCATCA11.4285714285714286No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG11.4285714285714286No Hit
CGGAAGGATCATTACCACACCTAAAAAACTTTCCACGTGAACCGTATTCA11.4285714285714286No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)