FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSChi473.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSChi473.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1793
Sequences flagged as poor quality0
Sequence length301
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG39021.751254880089235No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC30416.954824316787505No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG30116.787506971556052No Hit
GGCTTGGTCATTTAGAGGAAGTAACGCAGCCGCTGTCTCTTATAGCATCG1287.138873396542109No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG1065.911879531511433No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTTGGTG603.3463469046291134No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGACCGCAGCCGC301.6731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGAAGAACGCAGC281.5616285554935863No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGAACGCAGCCGC241.3385387618516453No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC201.1154489682097044No Hit
GGCTTGGTCATTTAGAGGAAGTAATCTCGCATCGATGAAGAACGCAGCCG181.003904071388734No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGGTTCCGTAGGTG60.33463469046291133No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG60.33463469046291133No Hit
GGCTTGGTCATTTAGAGGAAGTAAGCAGCATCGATGAAGAACGCAGCCGC60.33463469046291133No Hit
GGCTTGGTCATTTAGAGGAAGTATCTCGCATCGATGAAGAACGCAGCCGC50.2788622420524261No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGACCGCAGCCGC50.2788622420524261No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTAGGTG50.2788622420524261No Hit
GGCTTGGTCATTTAGAGGAAGTAACCCGCATCGATGAAGAACGCAGCCGC50.2788622420524261No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTAGGTG40.2230897936419409No Hit
GGCTTGGTCATTTAGAGGAAGTAAGCATCGATGAAGAACGCAGCCGCTGT40.2230897936419409No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGACGAACGCAGC40.2230897936419409No Hit
GCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGCT40.2230897936419409No Hit
GGCTTGGTCATTTAGAGGAAGTAACGCAGCCGTTGTCTCTTATAGCATCG40.2230897936419409No Hit
GGCTTGGTCATTTAGAGGAAGTAATCTCGCATCGATGAAGCACGCAGCCG30.16731734523145567No Hit
GGCTTGGTCATTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGCT30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTCTCCGTTGGTG30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAACGCAGCCGCTGTCTCTTATATCATCG30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTG30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTTACAAGGTCTCCGTTGGTG30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAACGCAGCCGCTGTCTCTTATACACATC30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGCTGAAGAACGCAGC30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCTATGAAGAACGCAGCCGC30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTCTCCGTAGGTG30.16731734523145567No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGA30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATAAAGAACGCAGCCGC30.16731734523145567No Hit
GGATTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGATCGCAGCCGC30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTTCGTTGGTG30.16731734523145567No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCCCCGTTGGTG30.16731734523145567No Hit
GGTTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCAGCCGCTGTCTCTTATAGCATCG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAGGGTCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTCTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTCTCCGTTGGTG20.11154489682097045No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCATTGGTG20.11154489682097045No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTTGTG20.11154489682097045No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTTGGTGA20.11154489682097045No Hit
GGATTGGTCATTTAGAGGAAGTAACGCAGCCGCTGTCTCTTATAGCATCG20.11154489682097045No Hit
GGCTTTGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCTATGAAGAACGC20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACGCCGCCGCTGTCTCTTATAGCATCG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGGAGAACGCAGCCGC20.11154489682097045No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTACGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACGCAGCCTCTGTCTCTTATAGCATCG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTCTCCGTCGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTATCCGTTGGTG20.11154489682097045No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACTAGCATCGATGAAGAACGCAGCCGC20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGCG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGTAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGTAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGCTGAAGATCGCAGCCGC20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAACAGTCGTAACAAGGTCTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTAGGTG20.11154489682097045No Hit
GGCTTGGTCATTTATAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTACGCAGCATCGATGAAGAACGCAGCCGC20.11154489682097045No Hit
GGCTTGGTCATTTAGAGTAAGTAACTCGCATCGATGAAGAACGCAGCCGC20.11154489682097045No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA20.11154489682097045No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTCTCCGTAGGTG20.11154489682097045No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)