FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSChi471.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSChi471.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2584
Sequences flagged as poor quality0
Sequence length301
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG86333.397832817337466No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG44017.027863777089784No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTG2218.552631578947368No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC1857.159442724458204No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC1425.495356037151703No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG1425.495356037151703No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGAAGAACGCAGC341.3157894736842104No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGACCGCAGCCGC240.9287925696594427No Hit
GGCTTGGTCATTTAGAGGAAGTATCTCGCATCGATGAAGAACGCAGCCGC140.541795665634675No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGCG120.46439628482972134No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGAACGCAGCCGC110.42569659442724456No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGCG100.38699690402476783No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA100.38699690402476783No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTCTCCGTAGGTG70.2708978328173375No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGCTGAAGAACGCAGC70.2708978328173375No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTGGGTG60.23219814241486067No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTCTCCGTAGGTG60.23219814241486067No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCCTCCGTAGGTG60.23219814241486067No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTAGGTG50.19349845201238391No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG50.19349845201238391No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCATCGATGACGAACGCAGC50.19349845201238391No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTATGTG50.19349845201238391No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG50.19349845201238391No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTT50.19349845201238391No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG50.19349845201238391No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTG40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTCTCCGTTGGTG40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGAGCATCGATGAAGAACGCA40.15479876160990713No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG40.15479876160990713No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTCTCCGTAGGTG40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGCTGGTG40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGACCGCAGCCGC40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTCTCCGTAGGTG40.15479876160990713No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAGGGTCTCCGTAGGTG40.15479876160990713No Hit
GGCTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTATCTCGCATCGATGCAGAACGCAGCCGC30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGTCAGCATCGATGAAGAACGC30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTTCTCGCATCGATGAAGAACGCAGCCGCT30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTCTCCGTTGGTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCTGTTGGTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGCAGGTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTTGGTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTCTCGCATCGATGAAGAACGCAGCCGCTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGCAAAAGTCGTAACAAGGTCTCCGTTGGTG30.11609907120743033No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGA30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCTCATCGATGAAGAACGCAGCCGC30.11609907120743033No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCTGCAGCATCGATGAAGAACGC30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTCTCCGTAGGTG30.11609907120743033No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTCTCCGTAGGTGA30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACATGGTCTCCGTAGGTG30.11609907120743033No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTT30.11609907120743033No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)