FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSChi469.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSChi469.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length301
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG1951.35135135135135No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG38.108108108108109No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG38.108108108108109No Hit
CGGAAGGATCATTACCACACCTAAAACTATTCACGGGAACCACTTTGTAT12.7027027027027026No Hit
CGCCCCGCAATGTATATCGGCTCGACCGACAGTCGCGGCGTCAACCACCT12.7027027027027026No Hit
AGACCCGGCATGTATATTGGGTCGACCGACACCCGCGGACTCATGCACTG12.7027027027027026No Hit
AGGCCTGGTATGTATATCGGGTCAACGGGCGAGCGTGGTCTGCACCACCT12.7027027027027026No Hit
CGGAAGGATCATTACCACACCTAAAAAACTATCCACGTGACCCGTTAAGC12.7027027027027026No Hit
CGGCCAGCTATGTATATCGGCTCCACCGGTGCCCGCGGCCTGCACCACCT12.7027027027027026No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG12.7027027027027026No Hit
AGGCCCGCCATGTACATAGGGTCCACCGGCCCGAGCGGCCTCTACCACCT12.7027027027027026No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGATTTCCGTAGGTG12.7027027027027026No Hit
CGCCCAGCCATGTATATCGGGGACACATCGGACGGCACCGGCCTGCACCA12.7027027027027026No Hit
AGACCAGCGATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCATCA12.7027027027027026No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG12.7027027027027026No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)