FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSChi455.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSChi455.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12012
Sequences flagged as poor quality0
Sequence length301
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG732260.95571095571095No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG248520.687645687645688No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG4553.787878787878788No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG610.5078255078255078No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA550.4578754578754579No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG450.37462537462537465No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG410.34132534132534137No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG380.31635031635031635No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG350.2913752913752914No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG330.27472527472527475No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG320.2664002664002664No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTCCCGTAGGTG310.2580752580752581No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG300.24975024975024976No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT270.2247752247752248No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG260.21645021645021645No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCGTAACAAGGTTTCCGTAGGTG260.21645021645021645No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTG260.21645021645021645No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG250.20812520812520816No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG230.1914751914751915No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGCAACAAGGTTTCCGTAGGTG200.1665001665001665No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG190.15817515817515818No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG190.15817515817515818No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAGCAAGGTTTCCGTAGGTG180.14985014985014986No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTGACAAGGTTTCCGTAGGTG180.14985014985014986No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG180.14985014985014986No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG180.14985014985014986No Hit
GGCTTGGTCATTTATAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG170.14152514152514153No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTGGGTG170.14152514152514153No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG170.14152514152514153No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCATAGGTG160.1332001332001332No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG160.1332001332001332No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG150.12487512487512488No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCATAACAAGGTTTCCGTAGGTG150.12487512487512488No Hit
GGTTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG130.10822510822510822No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG130.10822510822510822No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG130.10822510822510822No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)