FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSChi408.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSChi408.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525
Sequences flagged as poor quality0
Sequence length301
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG35868.19047619047619No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG366.857142857142858No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG203.8095238095238098No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG91.7142857142857144No Hit
GGCTTGGTAATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG71.3333333333333335No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG40.7619047619047619No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCGTAACAAGGTTTCCGTAGGTG40.7619047619047619No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAGGGTTTCCGTAGGTG30.5714285714285714No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG30.5714285714285714No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA30.5714285714285714No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTATGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCATAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCCTAACAAGGTTTCCGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGACGTAACAAGGTTTCCGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTT20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTTCGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCAGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGATGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG20.38095238095238093No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCTTAACAGGGTTTCCTTAGGTG10.19047619047619047No Hit
GGCTTTGTCATTTAGAGGCAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGTGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG10.19047619047619047No Hit
GGCTTAGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTTGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA10.19047619047619047No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCTTTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
AGGCCCGCTATGTACATCGGCGACACCGATGACGGCTCGGGCCTGCACCA10.19047619047619047No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA10.19047619047619047No Hit
GGCTTGGTCATTTAGTGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTGA10.19047619047619047No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGATCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
CCCTTATCCTCATCCAACGCGTCAGTTTTTGACAGAATCGTTAGTTGATG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTACGTAGGTG10.19047619047619047No Hit
AGGCCGGGGATGTACATTGGCGATACCAGCGACGGCACGGGCCTGCACCA10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTTCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTCTCCGTAGGTG10.19047619047619047No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTACGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAGGTCATAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GTCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTT10.19047619047619047No Hit
GGCCTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
AGGCCAGGTATGTATATCGGCGATACCGACGACGGTTCCGGCCTCCACCA10.19047619047619047No Hit
GGATTGGTCATTTAGAGGAAGTAAAAGTCGTCACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGCCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGCG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGCCATAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGCTTCCGTAGGTG10.19047619047619047No Hit
CGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACGAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAACTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGCAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGGGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
CGGCCAGGTATGTATATCGGCTCCACCGACTCCCGCGGCCTGATGCACTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAACAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGCTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGCG10.19047619047619047No Hit
TGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCAGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTTGTAACAAGGTCTCCGTAGGTG10.19047619047619047No Hit
AGCCCTGGCATGTACATTGGCGACACCGACGACGGGTCGGGCCTGCATCA10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAACGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGATTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTGA10.19047619047619047No Hit
GGCTTGGTCATTTCGAGGAAGTAAAAGTCGTAACAAAGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAGAGTCGTAACAAGGTTTCCGTAGGTT10.19047619047619047No Hit
GACTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAATGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTACGTAGGTG10.19047619047619047No Hit
GGCTTGGTTATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAATTAAAAGTCGTAACAAGGTCTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTAAACGTCATAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GCTTGGTCATTTCGAGGAAGTAAAAGTAGTAACAAGGTTTCCGTAGGTGA10.19047619047619047No Hit
CGGAAGGATCATTACCACACCTAAAAACTTTCCACGTGAACCGTATCAAC10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAAGTCATAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit
GGCTTGGTCATTTAGAGGAACTAAAAGTCGTAACAAGGTTTCCGTAGGTG10.19047619047619047No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)