FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH892.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH892.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132
Sequences flagged as poor quality0
Sequence length301
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC10176.51515151515152No Hit
ACGCCCAAGCAGATTTACATCACGGTAGTTGAGATCGGACTTCATAAGGT53.787878787878788No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG43.0303030303030303No Hit
GGATTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC32.272727272727273No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGCAGAACGC21.5151515151515151No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATAAAGAACGC21.5151515151515151No Hit
GGCTTTGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGTTGAAGAACGC10.7575757575757576No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCGTCGATGCAGAACGC10.7575757575757576No Hit
GGCTTGGTCATTTAGAGGGAGTAATCGTCGGCAGCATCGATGAAGAACGC10.7575757575757576No Hit
GCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGCA10.7575757575757576No Hit
AGACCAGGCATGTATATTGGCGACACCGACGACGGATCGGGCCTCCACCA10.7575757575757576No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCAGCAGCATCGATGAAGAACGC10.7575757575757576No Hit
AGTCCCGTAATGTACATCGGCGACACGCACGACGGCACCGGGCTGCACCA10.7575757575757576No Hit
GGTTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC10.7575757575757576No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCTATGAAGAACGC10.7575757575757576No Hit
GGCTTGGTAATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC10.7575757575757576No Hit
CGGAAGGATCATTACCACACCAAAAACTATCCACGTGAACCACTTTGTAT10.7575757575757576No Hit
GGATTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATTAAGAAACG10.7575757575757576No Hit
AGTCCGGCTATGTATATTGGCGACACCTCGGATGGCACCGGCCTGCACCA10.7575757575757576No Hit
GGCTTTGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC10.7575757575757576No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCTGCAGCATCGATGAAGAACGC10.7575757575757576No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)