FastQCFastQC Report
Mon 29 Jan 2024
000000000-LDHC6_l01_n01_ITSATH359.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-LDHC6_l01_n01_ITSATH359.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63
Sequences flagged as poor quality0
Sequence length301
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGAAGAACGC3453.96825396825397No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGAACGCAGCCGC1320.634920634920633No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCGGCAGCATCGATGCAGAACGC34.761904761904762No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGAACGCAGCCGC23.1746031746031744No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGGAGACCGCAGCCGC11.5873015873015872No Hit
TACCCTTACGATGTTCCTGATTACGAGTCTCGTGGGCTCGCAGATTTCGT11.5873015873015872No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAAAACGCAGCCGC11.5873015873015872No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG11.5873015873015872No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGTAGAACGCAGCCGC11.5873015873015872No Hit
AGCCCGGGCATGTACATCGGCGACACCGACGACGGGTCGGGCCTGCACCA11.5873015873015872No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGCAGACCGCAGCCGC11.5873015873015872No Hit
CGACCGGCTATGTACATCGGCGATACAGACGACGGTAGCGGTCTGCATCA11.5873015873015872No Hit
TACCCTTACGATGTTCCTGATTACGCATAAGCTGGGGTCAGCCCGCCTAA11.5873015873015872No Hit
GGCTTGGTCATTTAGAGGAAGTAATCGTCTGCAGCATCGATGAAGAACGC11.5873015873015872No Hit
GGCTTGGTCATTTAGAGGAAGTAACTCGCATCGATGAAGACCGCAGCCGC11.5873015873015872No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)